Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSCHOP00000000876pdb,2f5z,F,#11463081.237
LLC1.3apdb,1zy8,D,#129493072.863
ENSFALP00000010588pdb,1v59,A,#142507058.526
ENSEEUP00000006736pdb,1zy8,A,#137509093.235
ENSPVAP00000006582pdb,1zmc,F,#140509087.872
YFL018Cpdb,1dxl,C,#127498056.144
ENSVPAP00000011618pdb,3rnm,C,#125496087.288
ENSCAPP00000014746pdb,1zy8,F,#139470083.696
LLC1.3apdb,1zmc,C,#129493072.863
YFL018Cpdb,1zmd,D,#128498057.595
YFL018Cpdb,1dxl,B,#127498056.144

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.3820.4770.140.3980.4610.14

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.7618270799347470.05383360522022840.011419249592169700.001631321370309950.003262642740619900.168026101141925

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)