Protein DNA2

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSXMAP00000014769	pdb,2xzp,A,#1	627	1058	6.89e-50	30.947
ENSPFOP00000015340	pdb,2xzp,A,#1	751	1182	7.6e-50	30.737
ENSBTAP00000003395	pdb,2xzp,A,#1	686	1120	1.56e-49	30.722
ENSORLP00000013109	pdb,2xzp,A,#1	356	783	3.88e-49	32.135
ENSAMEP00000019053	pdb,2xzp,A,#1	624	1045	3.88e-49	30.303
ENSDORP00000008411	pdb,2xzp,A,#1	556	1022	8.15e-49	29.767
ENSNGAP00000021164	pdb,2xzp,A,#1	610	1042	8.24e-49	29.63
ENSRNOP00000000438	pdb,2xzp,A,#1	767	1195	1.85e-48	29.876
ENSMEUP00000008007	pdb,2xzp,A,#1	613	1058	3.93e-48	30.584
ENSTRUP00000012111	pdb,2xzp,A,#1	633	1050	4.67e-48	31.522
ENSCGRP00000020341	pdb,2xzp,A,#1	596	1030	9.69e-48	29.303

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.029	0.058	0.912	0.032	0.517	0.451

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.415156507413509	0.159253157605711	0.00878638110928062	0.000549148819330038	0.00219659527732015	0.00109829763866008	0.00164744645799012	0.411312465678199

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.003724003 0.672961875 2.168005386 25.874503574 0.000000580 6.683235000 176.057188245 0.185275879 0.008125376 7.215675047 19.545115171 0.000277238 0.069872679 0.211177624 0.003268012 104.104845115 0.127662010 0.170266537 0.189495601 7.796506265 8.736912346 28.632088959 0.000000082 0.010359423 0.034968508 0.044276963 8.464369350 0.002001643 13.453693407 0.000000024 0.000525001 0.048219596 0.320652300 0.239267998 0.023315292 6.709681502 27.581413820 0.000072426 0.020183433 0.035806569 0.090079336 0.026597210 0.302620483 0.000014026 6.744669757 36.773312153 0.000008130 0.008966855 0.001510418 0.167735909 0.383422305 0.011249906 0.000246682 0.000636412 5.885056824 102.632247816 0.004662441 0.015862407 0.012509170 0.183458181 0.072146400 0.129348443 0.217065833 0.058240151 0.003728259 5.781906300 112.651310564 0.000825235 0.000727309 0.000329285 0.142225895 0.097907360 0.147557719 0.116338474 0.054616534 0.101756643 0.012707784 7.901260908 8.811596505 0.021310554 0.047969920 0.000000041 0.334128699 0.000846837 0.239385775 0.000002504 0.167201233 0.000636513 0.004282842 0.000006532 20.257589181 2433.391580620 0.000000001 0.000000502 0.044826228 0.531806109 0.248718304 0.157249520 0.003156739 0.000352291 0.000007546 0.094929003 6.806355031 2.388083598 23.091165152 2497.990468626 0.000004378 1.020948045 1.808703347 3.580533911 0.008016027 0.025725918 0.016857131 0.014314009 3.221303628 4.248405748 5.297291147 3.776177871 0.890765077 111.380877806 4162.136616362 0.000013320 4.767938306 0.611642635 0.598922722 0.029594213 0.025555448 0.026515165 0.004443219 0.820027483 1.026365743 10.375043559 41.581719787 14.816602230 59.558530803 2820.003869621 0.000166272 0.000000001 0.000000001 0.000000002 0.000000001 0.000020769 0.000000001 0.000000321 0.000000001 0.000000002 0.070415356 0.000145361 6.534033900 30.090779429 27.673457611 555.840018795 897.482035335 10.131215250 0.005882215 3.136180671 0.000004594 0.000009389 0.745462443 0.009540757 3.354590256 0.029046944 0.009095604 0.002321571 0.437849985 1.671629166 0.003149436 606.504825145 34.270299965 150.422475339 584.360764867 0.063439793 0.000000001 0.000000001 0.000000002 0.000000001 1.217554705 0.000000044 1.340029901 0.000000817 0.000038058 2.228530737 0.000290945 0.016047355 0.000011910 0.036984871 10.175031268 1.286869781 1128.237660329 707.242859310 0.000001259 0.148525000 0.076169400 0.057633000 0.086291600 0.079426000 0.082771000 0.075849800 0.088607600 0.088783000 0.094088000 0.070306500 0.037474400 0.011147900 0.000720911 0.000289434 0.000343452 0.000619506 0.000448276 0.000504018