Protein DNAJA3

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSOGAP00000013638	pdb,2ctt,A,#1	214	304	1.38e-61	98.901
ENSMLEP00000023309	pdb,2ctt,A,#1	205	295	4.61e-61	96.703
ENSNLEP00000011972	pdb,2ctt,A,#1	165	255	8.4e-61	97.802
ENSCCAP00000018051	pdb,2ctt,A,#1	213	303	8.41e-61	96.703
ENSCSAP00000005442	pdb,2ctt,A,#1	213	303	8.48e-61	97.802
ENSTSYP00000007203	pdb,2ctt,A,#1	213	303	4.8e-60	96.703
ENSMNEP00000019184	pdb,2ctt,A,#1	213	303	5.63e-60	95.604
ENSCGRP00001023343	pdb,2ctt,A,#1	213	303	6.2e-60	96.703
ENSSTOP00000000410	pdb,2ctt,A,#1	213	303	7.42e-60	95.604
ENSOCUP00000003817	pdb,2ctt,A,#1	186	276	1.37e-59	95.604
ENSMUSP00000053842	pdb,2ctt,A,#1	213	303	2.26e-59	96.703

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.065	0.172	0.762	0.128	0.241	0.631

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.420512820512821	0.178205128205128	0.0179487179487179	0.00512820512820513	0	0.00256410256410256	0.00384615384615385	0.371794871794872

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

1.015198575 0.000000059 3.720421621 0.004442877 0.026857286 6.346807391 0.113116684 0.153808262 0.339513099 5.070661296 0.003775849 0.074951258 0.167313691 0.168624818 0.886861097 0.578195458 0.182283812 0.467496703 1.360389392 4.322708848 6.149012392 0.203431364 0.058878309 0.138859592 0.136993398 0.726851211 6.297878563 0.869387856 0.000000059 0.013829759 0.062815066 0.101802954 0.110106772 0.875767361 0.113499421 6.333395102 0.000000059 0.034751844 0.048870139 0.025230391 0.217708354 0.091596379 0.468372728 0.293662883 6.006183025 0.000000059 0.007917050 0.017872824 0.000444178 0.053984775 0.121246908 0.310957644 0.004123570 0.013028156 5.482693533 0.000000059 0.000255518 0.009279061 0.000292636 0.000100961 0.029774453 0.064796727 0.072059618 0.112586240 0.127186752 5.199874013 0.000000059 0.000000341 0.000000385 0.000005067 0.027149778 0.053611805 0.075040219 0.120748350 0.067538334 0.077050949 0.254685136 5.757893445 0.000000059 0.000000054 0.000028066 0.000000078 0.000031059 0.000171422 0.261149093 0.107515845 0.000014744 0.109913878 0.093235191 0.000764613 5.687208638 0.000000059 0.174945876 0.000000146 0.000000136 0.023671775 0.239645655 0.414550168 0.018012902 0.181157426 0.205607786 0.295324108 0.084984322 0.410627329 7.296250912 0.000000059 0.000000001 0.000000013 0.000000495 0.015895106 0.000002076 0.336758318 0.000002158 0.000000057 0.509687012 0.374980657 0.120378585 0.499904232 0.131057217 3.239341737 0.000000059 0.245753228 0.000300612 0.000000908 0.000265564 0.002133306 0.492407318 0.000000138 0.000159161 0.762731856 0.635896663 0.132054886 0.320262891 0.243859524 0.789533613 1.361003434 0.000000059 0.063604640 0.000000001 1.025434710 0.000256063 0.105068176 0.204563129 0.000000121 0.000000080 0.227458359 0.122120002 0.301180609 0.309043423 0.000000004 0.000000014 0.000000018 2.295766190 0.000000059 0.000000001 0.000000001 0.000000002 0.000007489 0.567427833 0.007809134 0.000014146 0.000407767 0.156412740 0.528779092 0.000791563 0.354492657 1.438396019 4.873431373 0.000000018 1.941569365 8.749035470 0.000000059 0.000000001 0.019678383 0.205547723 0.001155522 0.000002528 0.034226138 0.350092967 0.258798745 0.876845925 0.012876690 0.142000218 1.141911984 0.000000012 2.967941176 0.000000018 0.757540206 1.214542552 3.819620314 0.001690290 0.072472700 0.080213400 0.089370000 0.101150000 0.082067000 0.101071000 0.063678800 0.076661500 0.066382700 0.073023500 0.073352000 0.061607200 0.026603800 0.007140000 0.005427760 0.005029040 0.004497010 0.002600570 0.005961960