Protein DTYMK

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
YJR057W	pdb,3tmk,F,#1	1	216	5.67e-161	100
YJR057W	pdb,3tmk,A,#1	1	216	5.67e-161	100
YJR057W	pdb,3tmk,B,#1	1	216	5.67e-161	100
YJR057W	pdb,3tmk,E,#1	2	216	4.75e-160	100
YJR057W	pdb,3tmk,G,#1	2	216	4.75e-160	100
YJR057W	pdb,3tmk,H,#1	3	216	3.27e-159	100
YJR057W	pdb,3tmk,D,#1	3	216	3.27e-159	100
ENSMFAP00000000112	pdb,1e2f,A,#1	3	212	2.38e-150	95.714
ENSMFAP00000000112	pdb,1nmx,A,#1	3	212	2.38e-150	95.714
ENSMFAP00000000112	pdb,1e2e,A,#1	4	212	1.14e-149	95.694
ENSMFAP00000000112	pdb,1e2q,A,#1	4	212	1.14e-149	95.694

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.066	0.459	0.475	0.142	0.46	0.398

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.623239436619718	0.0176056338028169	0	0	0	0	0	0.359154929577465

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.795852374 0.000049817 2.993214349 0.346995471 0.047953911 4.340175465 0.105456177 0.239193443 0.769118136 3.598522209 0.000002468 0.084269021 0.000962990 0.406014868 0.861959360 0.526376547 0.345670250 0.143651641 0.292279360 3.550614476 4.510925234 0.000000006 0.228925135 0.004982665 0.132268905 0.012099778 5.666912210 0.091240476 0.000000003 0.000804493 0.254108304 0.140343634 0.816690070 1.053779845 0.202120520 9.227893869 0.037214226 0.110756815 0.161099682 0.251048318 0.222724583 1.073205389 0.001819375 0.672337180 3.744701819 0.000000003 0.011991150 0.000108034 0.144793352 0.005980748 0.536845332 0.143085598 0.400030181 0.734514723 5.464373056 0.000000003 0.029550840 0.185082438 0.110201379 0.056740203 0.004081442 0.425611563 0.524859648 0.671357971 0.333352828 6.934492885 0.000000003 0.000006488 0.071902133 0.182145333 0.000002662 0.664000558 0.063855320 0.000129813 0.003248476 0.340603343 1.093583464 5.160035745 0.000000003 0.000000001 0.115580850 0.100099900 0.117003400 0.602813725 0.000000814 0.000000094 0.000000151 0.132098032 0.939807498 0.011943804 6.600629590 0.000000003 0.090646344 0.000000002 0.000000001 0.000000010 0.048157915 0.598804292 0.264276377 0.304585247 0.095032990 0.000004847 0.003187235 0.003811451 7.206725455 0.000000003 0.000000001 0.000000002 0.000000001 0.000000181 1.753340627 0.000102333 0.000159638 1.545099577 1.090424427 0.036144024 1.735141221 7.277399224 0.003059764 41.295771037 0.000000003 0.000000001 0.000000002 0.000000001 0.000000004 0.040820377 1.383543257 0.000000110 0.000015349 0.013861057 2.078418190 0.014678288 0.000095564 3.530128577 0.004494359 503.143111652 0.000000003 0.000000001 0.163082741 0.227800729 0.000000001 0.000368321 0.000000098 0.000000002 0.544344257 0.006507918 0.000001201 0.229782013 1.857972499 1.946521577 0.000000008 0.002065219 20.638822974 0.000000003 0.000000001 0.000000002 0.000000001 0.000000001 0.022527384 0.000000024 0.000000007 0.000000051 1.788419185 0.000000001 0.000000033 1.202364521 3.233359309 0.000000008 0.000000419 0.000000026 16.963216424 1.132869289 0.000037215 1.119296627 0.000099556 0.000008021 1.380858356 0.000488811 0.000003716 0.000000286 1.750250482 0.000069548 1.722267006 2.175169954 0.000000060 0.000000010 14.848595043 0.122308917 0.000000008 0.000000025 0.029192600 0.134696000 0.066110000 0.070970800 0.086171000 0.068826900 0.122187000 0.049037300 0.061695700 0.064974700 0.068716200 0.059421100 0.050572600 0.025152200 0.012480600 0.003547440 0.003788530 0.012274500 0.003927110 0.006257560