Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSPEMP00000018217pdb,1dci,B,#154326094.161
ENSMICP00000015829pdb,1dci,C,#154328083.636
ENSCJAP00000025587pdb,2vre,C,#150308093.05
ENSMICP00000015829pdb,2vre,A,#148313091.353
MGP_CAROLIEiJ_P0078437pdb,1dci,B,#154327092.701
ENSCJAP00000025587pdb,1dci,C,#154328084.364
MGP_CAROLIEiJ_P0078437pdb,1dci,C,#154327092.701
ENSP00000221418pdb,1dci,C,#154328082.909
ENSMAUP00000017900pdb,1dci,C,#155327089.781
ENSMOCP00000020435pdb,1dci,C,#154326091.241
ENSPEMP00000018217pdb,1dci,C,#154326094.161

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.1480.340.5120.3880.3390.274

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.4929577464788730.06338028169014080.01936619718309860.0035211267605633800.0035211267605633800.417253521126761

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)