Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSNLEP00000014638pdb,2vx2,B,#145299098.431
ENSNLEP00000014638pdb,2vx2,D,#145300098.438
ENSNLEP00000014638pdb,2vx2,F,#147300098.425
ENSNLEP00000014638pdb,2vx2,G,#146298098.419
ENSNLEP00000014638pdb,2vx2,C,#145300098.438
ENSNLEP00000014638pdb,2vx2,H,#145298098.425
ENSNLEP00000014638pdb,2vx2,E,#146300098.431
ENSNLEP00000014638pdb,2vx2,I,#146299098.425
ENSCGRP00001011607pdb,2vx2,D,#1453004.53e-17087.891
ENSCGRP00001011607pdb,2vx2,C,#1453004.53e-17087.891
ENSCGRP00001011607pdb,2vx2,E,#1463003.7e-16987.843

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.2510.4180.3310.5050.2760.22

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.5567685589519650.04148471615720520.05676855895196510.0065502183406113500.002183406113537120.002183406113537120.334061135371179

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)