Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSHGLP00000005348pdb,2zqq,C,#172337096.992
ENSDNOP00000007459pdb,2gtr,A,#1286543099.225
ENSJJAP00000015906pdb,1dub,A,#129287093.05
ENSDORP00000020945pdb,1dub,A,#132291092.308
ENSCATP00000035751pdb,2vx2,D,#145300097.656
ENSOARP00000000051pdb,2gtr,A,#1288545097.287
ENSSHAP00000010186pdb,2gtr,B,#1287544093.798
ENSFDAP00000003955pdb,2gtr,A,#1314571096.512
ENSGGOP00000004627pdb,2hw5,B,#131290098.077
ENSOGAP00000004735pdb,1ey3,A,#130287092.636
ENSMFAP00000030732pdb,2hw5,C,#128287096.154

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0730.2430.6840.0220.3080.67

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.05308392315470170.0768452982810920.03033367037411530.03538928210313450.03387259858442870.01820020222446920.01213346814964610.740141557128413

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)