Protein Mar-05

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
FBpp0071135	pdb,2m6m,A,#1	22	88	2.2e-08	40.58
ENSACAP00000005964	pdb,2d8s,A,#1	15	82	6.96e-07	36.765
FBpp0302614	pdb,2m6m,A,#1	44	86	8.28e-07	45.455
ENSCSAVP00000006278	pdb,2m6m,A,#1	30	102	9.42e-07	33.333

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.128	0.268	0.604	0.117	0.508	0.376

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.326153846153846	0.0953846153846154	0.02	0.0123076923076923	0.02	0.0307692307692308	0.0138461538461538	0.481538461538462

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.000000080 0.000000080 1.911068617 0.000019982 0.000000029 6.213464659 7.281126946 0.000664542 0.000208824 10.710656805 0.000043623 0.029732807 0.000000001 0.000000007 0.000412981 2.203623357 0.000000001 0.102064326 0.205653416 9.187831606 8.044268470 5.309942177 0.095023035 0.000194661 0.685783279 0.005002403 8.344126570 1.074197573 0.000603254 0.000000001 0.000000095 0.124990230 0.002198738 0.440390979 0.449920781 10.069024350 0.000030162 0.009342796 0.000000001 0.000000015 0.000070585 0.000001601 0.000115319 0.046016949 7.740604936 0.028739123 0.005554105 0.000000001 0.000000084 0.141048543 0.003416938 0.131730647 0.339135438 0.073196364 8.930581785 8.159610557 0.008618586 0.055671092 0.000172926 0.000044558 0.007911296 0.000050935 0.130850907 0.213187024 0.026910078 8.023454882 2.427833605 0.000000001 0.000000001 0.078354385 0.005612881 0.000000299 0.000012387 0.563122540 0.034706331 0.005133040 0.675556463 8.881444631 10.610950269 0.000000001 0.000000001 0.000001758 0.000002376 0.000000001 0.000000026 0.000286255 0.344120314 0.014373072 0.580745996 1.362430528 8.401546814 0.517540159 0.000000001 0.000000001 0.000000002 0.000000006 0.015461368 0.151914473 0.014200291 0.000568375 0.000000970 2.631571174 1.855379400 0.385105241 11.316180007 0.010717133 0.000000001 0.000000001 0.000000002 0.000006061 0.000000001 0.000001332 1.571558105 0.000000315 0.000032034 1.560364633 0.048009899 2.041725674 0.000029056 0.000068390 0.012110978 0.000000001 0.000000001 0.000000012 1.948685284 0.000000314 0.695300122 0.026300746 0.000000560 4.457286425 1.871704427 0.018056781 0.000009516 0.000000004 0.001901279 346.462652725 0.000000080 0.000000001 0.000000001 0.000000002 0.000000002 1.329628594 0.002057520 0.000000001 0.000000002 0.509461555 0.588498944 0.000000002 0.000000002 0.000000002 51.896459608 0.000005376 80.616453082 0.000000080 0.205526794 0.000000488 0.000000002 0.000000003 0.000000001 0.000012047 0.000000001 0.000000002 0.000000002 0.000000022 1.054868366 0.000000002 0.000000002 27.210537219 36.201287050 1.987627939 99.870716163 0.011114916 0.000000001 0.000000001 0.000000002 0.934914277 0.000000001 0.000004751 0.000000009 0.000000002 0.000004496 1.353784966 0.417943200 3.955319490 0.133657114 24.916424062 0.000004502 0.000016165 39.335481076 0.000004513 0.001246910 0.192969000 0.088736000 0.055782200 0.049531600 0.066878300 0.073025300 0.074553400 0.066598800 0.065713300 0.074474900 0.063479200 0.063692200 0.043867100 0.004585650 0.002452120 0.001534910 0.002861920 0.002997010 0.005020430