Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSGACP00000026758pdb,1ega,B,#1193411.15e-3029.664
ENSGACP00000026758pdb,3ieu,A,#1193411.15e-3029.664
ENSGACP00000026758pdb,1ega,A,#1193411.19e-3029.664
ENSORLP00000014328pdb,1ega,B,#1153475.23e-3028.228
ENSORLP00000014328pdb,3ieu,A,#1153475.23e-3028.228
ENSORLP00000014328pdb,1ega,A,#1153475.62e-3028.529
ENSXETP00000042501pdb,1ega,B,#1563809.23e-2930.488
ENSXETP00000042501pdb,3ieu,A,#1563809.23e-2930.488
ENSXETP00000042501pdb,1ega,A,#1563801.16e-2830.488
ENSDARP00000078213pdb,1ega,B,#11134461.28e-2828.743
ENSDARP00000078213pdb,3ieu,A,#11134461.28e-2828.743

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0550.0760.8690.0780.4720.449

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.29440.2720.04640.00320.00640.00640.0080.3632

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)