Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSTNIP00000011217pdb,2a1u,A,#120332080.573
ENSGALP00000004621pdb,2a1u,A,#122325085.855
ENSORLP00000009832pdb,1efv,A,#121332082.692
ENSGACP00000014030pdb,2a1u,A,#120333079.618
ENSLOCP00000018117pdb,1efv,A,#121323084.158
ENSPVAP00000013966pdb,2a1u,A,#119328093.312
ENSSHAP00000018987pdb,1efv,A,#120331091.026
ENSFALP00000011176pdb,2a1u,A,#115316084.768
ENSGMOP00000007232pdb,1efv,A,#18309080.795
ENSXMAP00000003135pdb,2a1u,A,#120333082.484
ENSFDAP00000006500pdb,1efv,A,#120331093.269

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.1720.4140.4140.5710.2740.155

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.6747787610619470.05973451327433630.00884955752212389000.002212389380530970.002212389380530970.252212389380531

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)