Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSCGRP00001013364pdb,1qh3,A,#150309090.769
ENSODEP00000019649pdb,1qh3,A,#150309090
ENSBTAP00000026635pdb,1qh3,B,#149308090.769
ENSTTRP00000010797pdb,1qh5,A,#150309091.538
ENSPCOP00000028359pdb,1qh5,A,#150309093.077
ENSDORP00000009093pdb,1qh3,A,#145304090.769
ENSTTRP00000010797pdb,1qh5,B,#150309091.538
ENSCJAP00000027179pdb,1qh5,A,#148307095.385
ENSBTAP00000026635pdb,1qh3,A,#149308090.769
ENSPVAP00000015751pdb,1qh3,A,#150309090.769
ENSODEP00000019649pdb,1qh5,A,#150309090

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0490.2180.7330.0080.5670.425

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.1155660377358490.208726415094340.03301886792452830.02948113207547170.01297169811320750.01061320754716980.008254716981132080.581367924528302

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)