Protein FDX1

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSCSAP00000015113	pdb,3p1m,H,#1	64	184	2.97e-86	99.174
ENSCSAP00000015113	pdb,3p1m,F,#1	64	184	2.97e-86	99.174
ENSCCAP00000012937	pdb,3p1m,F,#1	64	184	1.52e-85	97.521
ENSCCAP00000012937	pdb,3p1m,H,#1	64	184	1.52e-85	97.521
ENSCSAP00000015113	pdb,3p1m,E,#1	65	184	1.81e-85	99.167
ENSCSAP00000015113	pdb,3p1m,D,#1	65	184	1.81e-85	99.167
ENSCSAP00000015113	pdb,3p1m,C,#1	65	184	1.81e-85	99.167
ENSCCAP00000012937	pdb,3p1m,E,#1	65	184	1.01e-84	97.5
ENSCCAP00000012937	pdb,3p1m,C,#1	65	184	1.01e-84	97.5
ENSCCAP00000012937	pdb,3p1m,D,#1	65	184	1.01e-84	97.5
ENSCSAP00000015113	pdb,3p1m,B,#1	66	184	1.08e-84	99.16

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.022	0.276	0.702	0.051	0.48	0.47

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.413654618473896	0.156626506024096	0.152610441767068	0.0321285140562249	0.0281124497991968	0.00401606425702811	0.00401606425702811	0.208835341365462

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

1.060113786 0.000000014 1.604420793 0.000000052 0.619070921 2.330104621 0.105938192 0.292104362 0.923816287 2.806759300 0.000000084 0.152537535 0.515173387 0.787308851 1.318567823 0.000132458 0.089838593 0.417491384 2.072901124 2.491052211 4.968415623 0.000000014 0.189497665 0.171872575 0.562788032 0.913427654 4.113667830 1.082097955 0.000000014 0.066345806 0.187309589 0.560895150 0.491635973 3.487651747 0.596119347 2.094565557 0.000000014 0.076126580 0.140839097 0.296694342 0.130742327 0.311274526 0.800008444 1.615453224 2.946543572 0.054601409 0.074447052 0.109500535 0.008461404 0.001096759 0.254946166 0.336438356 0.195586391 0.619108018 4.594316490 0.000000014 0.070176066 0.011769952 0.013689529 0.001122313 0.225672716 0.238546632 0.369547748 0.632493810 1.216264077 4.274931646 0.000000014 0.034087087 0.036868440 0.002308666 0.000002209 0.115765243 0.033096078 0.244020111 0.065506423 0.049796253 0.801647103 1.995887868 0.000000014 0.159265948 0.062557642 0.000032911 0.123546335 0.000020099 0.031702852 0.149731251 0.021661285 0.249680336 0.174650527 0.792228506 4.658619902 0.000000014 0.000000287 0.000000320 0.054319206 0.062687490 0.054817211 0.000065041 0.058269114 0.279047692 0.001217495 0.035188632 0.007266343 0.722909129 3.831389411 0.000000014 0.001241923 0.000010601 0.146726860 0.031877908 0.107787990 0.089105742 0.000743153 0.076958730 0.004677563 0.426908188 0.000001686 0.064326109 1.009505681 4.083601124 0.000000014 0.045450809 0.000001247 0.000081256 0.147601013 0.001122708 0.122835429 0.183324895 0.536907897 1.159737492 0.019846476 0.199988522 1.575828094 0.323197914 0.611584132 8.419431865 0.000000014 0.000000001 0.064458939 0.000000001 0.007448786 0.000000001 0.000000001 0.000000275 0.068943784 0.284653452 0.000000002 0.000000003 0.000000002 0.000000004 0.317410073 1.990218197 0.967784379 0.000000014 0.000000001 0.000000001 0.000000001 0.000000001 0.000000031 0.000000015 0.573136270 0.000044645 0.046676297 0.000000021 0.000001170 0.541380537 0.425895827 0.000000005 0.164284068 4.425668833 5.041394196 0.000000014 0.020865701 0.134877743 0.000747467 0.071307372 0.622710726 0.984349784 1.036858078 0.440844095 0.906770457 1.213644807 1.030874629 1.897291791 0.780610319 0.737363472 0.000010549 0.630108050 1.322311850 1.733506708 0.007364700 0.093186900 0.094072600 0.089334700 0.097985100 0.077934100 0.106580000 0.067944400 0.061102100 0.056074500 0.054532100 0.050533400 0.045550400 0.025163900 0.021845400 0.012145000 0.012540500 0.006875360 0.007298270 0.011936400