Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
YIL065Cpdb,1y8m,A,#111387.47e-102100
ENSCPOP00000018321pdb,1pc2,A,#111451.68e-10096.552
ENSMOCP00000007576pdb,1pc2,A,#111458.76e-9794.483
YIL065Cpdb,3uux,A,#131293.47e-93100
ENSMODP00000006194pdb,1pc2,A,#111451.07e-9290.345
ENSMEUP00000011266pdb,1pc2,A,#111451.43e-9290.345
YIL065Cpdb,2pqn,A,#141291.65e-92100
YIL065Cpdb,3uux,C,#131279.02e-92100
YIL065Cpdb,2pqr,B,#151283.22e-91100
YIL065Cpdb,3o48,A,#151272.35e-90100
ENSOARP00000015935pdb,1pc2,A,#1151441.32e-8996.923

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.080.2440.6760.3570.1660.478

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.3678571428571430.1785714285714290.003571428571428570.0035714285714285700.003571428571428570.01785714285714290.425

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)