Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSORLP00000004051pdb,1jdx,A,#164421087.465
ENSTBEP00000007612pdb,4jdw,A,#141363082.663
ENSTNIP00000012360pdb,3jdw,A,#125385080.332
ENSTNIP00000015545pdb,6jdw,A,#162418086.072
ENSCINP00000026713pdb,6jdw,A,#152410073.816
ENSSHAP00000004702pdb,1jdx,A,#162421094.722
ENSAPLP00000002831pdb,7jdw,A,#163422088.333
ENSSARP00000005765pdb,9jdw,A,#197419079.205
ENSJJAP00000000375pdb,2jdx,A,#148407094.444
ENSFALP00000011816pdb,3jdw,A,#165424089.722
ENSXMAP00000002108pdb,9jdw,A,#164422085.515

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.3290.3360.3350.4080.4090.183

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.7606490872210950.09939148073022310.002028397565922920.002028397565922920000.135902636916836

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)