Protein GCAT

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSOGAP00000006985	pdb,2bwp,A,#1	151	540	1.14e-146	52.43
ENSOGAP00000006985	pdb,2bwp,E,#1	151	540	1.14e-146	52.43
ENSOGAP00000006985	pdb,2bwp,D,#1	151	540	1.14e-146	52.43
ENSOGAP00000006985	pdb,2bwo,B,#1	151	540	1.6e-146	52.43
ENSOGAP00000006985	pdb,2bwo,E,#1	151	540	1.6e-146	52.43
ENSSTOP00000007155	pdb,2bwp,A,#1	151	541	1.63e-146	51.531
ENSSTOP00000007155	pdb,2bwp,D,#1	151	541	1.63e-146	51.531
ENSSTOP00000007155	pdb,2bwp,E,#1	151	541	1.63e-146	51.531
ENSMODP00000037223	pdb,2bwp,D,#1	69	465	1.82e-146	50.754
ENSMODP00000037223	pdb,2bwp,A,#1	69	465	1.82e-146	50.754
ENSMODP00000037223	pdb,2bwp,E,#1	69	465	1.82e-146	50.754

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.038	0.158	0.804	0.015	0.495	0.491

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.335526315789474	0.115601503759398	0.0958646616541353	0.0300751879699248	0.0216165413533835	0.0103383458646617	0.00281954887218045	0.388157894736842

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.319347656 4.862509277 1.469598485 1.633892177 0.000514114 5.366119359 11.810043959 0.251952268 0.013710943 4.577662184 0.742788635 0.001310502 0.343646367 0.515819477 0.230386461 13.013682468 0.277123877 0.139073353 0.623399377 4.187113155 6.176044567 9.767112600 0.033135081 0.000315043 0.073420669 0.193364115 6.815467245 0.580573139 0.391486042 0.015127625 0.003667791 0.180012416 0.382771458 1.163738666 0.457360253 7.975589618 6.894479438 0.000787772 0.036622970 0.099173433 0.164839931 0.253135978 0.179557298 0.171257494 6.996522654 9.401016194 0.010716363 0.079606089 0.027106528 0.094678823 0.531140812 0.170976717 0.246529059 0.462972572 5.802526440 3.809016347 0.022759397 0.019869299 0.000680357 0.216884279 0.183560306 0.139598428 0.043801989 0.458750250 0.121044053 7.991298523 0.154805229 0.014876279 0.000021651 0.121156678 0.112955517 0.603948007 0.402824146 0.331640880 0.152349886 0.350476215 0.312410051 9.491475682 0.540558336 0.000000001 0.000000243 0.110937354 0.499781334 0.004235607 0.053570902 0.926925369 0.362249731 0.267796493 0.129295586 0.085757116 19.996205440 105.048621287 0.070828860 0.650139048 0.002466152 0.001628331 0.000383924 0.050364154 0.000000002 0.578605634 0.056345245 0.084103951 0.373015657 0.000000050 40.438990311 0.244623114 0.515467848 0.907795466 0.741614967 0.001007798 0.022171703 0.035027917 0.014815091 0.394224178 0.467618187 0.009099287 0.715171311 0.039599736 0.411865694 22.951344192 0.259868313 0.393922950 0.013696622 0.000009215 0.428404912 0.016560332 0.642408945 0.681428725 0.478357626 0.176006771 0.000001080 0.000002699 0.787200240 0.000000015 0.136066972 50.978619613 0.002452941 0.000041277 2.163506745 0.000061439 0.676141898 0.000000069 0.000148538 0.000000001 0.050246699 0.462130107 0.425880748 0.042401845 0.000029296 0.199231941 0.000000041 18.922878805 33.681567483 0.000042253 0.000000001 0.000499852 0.000000041 0.064493499 0.000009471 0.000000654 0.000000001 0.510924722 0.607847374 0.069841886 0.000000002 0.826601117 0.003271919 19.790599971 0.000000043 25.221044273 180.437874311 0.187680831 0.011329859 0.000815945 1.290583156 0.036068166 0.000028244 0.000005408 0.265819004 0.014742781 1.660028657 0.298613049 0.000000084 0.692102728 6.504112629 0.005009085 5.541460211 0.000000054 0.061029186 71.281190192 0.000262745 0.153693000 0.085186700 0.069746300 0.110671000 0.073525700 0.090250300 0.069642500 0.084029600 0.084237100 0.081365500 0.055200900 0.023981700 0.006884890 0.002415950 0.002345140 0.001863880 0.001265660 0.001384650 0.002046580