Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSOGAP00000010947pdb,1siq,A,#147434095.361
ENSOCUP00000010321pdb,2r0m,A,#152440088.432
ENSSHAP00000017885pdb,2r0m,A,#139427087.661
ENSLACP00000012377pdb,1siq,A,#151435064.45
ENSXMAP00000011650pdb,2r0m,A,#149437081.491
ENSJJAP00000017446pdb,2r0m,A,#148436092.031
ENSOPRP00000004568pdb,2r0n,A,#14393085.897
ENSMEUP00000004190pdb,1siq,A,#15369073.842
ENSTTRP00000003372pdb,1siq,A,#147434090.769
ENSCGRP00001010779pdb,1siq,A,#145432090.722
ENSODEP00000013860pdb,1sir,A,#145434087.949

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.3340.3990.2660.4380.3810.181

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.5185676392572940.05039787798408490.01061007957559680.00265251989389920.00132625994694960.00132625994694960.00132625994694960.413793103448276

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)