Protein GDAP1

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSLOCP00000002336	pdb,1aw9,A,#1	47	317	2.89e-10	25.092
ENSONIP00000017992	pdb,1aw9,A,#1	38	310	1.5e-09	24.176
ENSXMAP00000010472	pdb,1aw9,A,#1	38	135	7.83e-09	35.714
ENSFDAP00000016229	pdb,1aw9,A,#1	26	264	9.32e-09	23.849
FBpp0076870	pdb,3qav,A,#1	26	103	9.8e-09	37.179
FBpp0076870	pdb,3qaw,A,#1	26	103	9.8e-09	37.179
ENSACAP00000012877	pdb,4qq7,A,#1	26	113	1.59e-08	38.202
FBpp0076870	pdb,1gnw,B,#1	30	128	2.4e-08	31.313
FBpp0076870	pdb,1gnw,A,#1	30	128	2.4e-08	31.313
FBpp0076870	pdb,1bx9,A,#1	30	128	2.4e-08	31.313
ENSAMXP00000000443	pdb,4qq7,A,#1	45	311	4.54e-08	25.373

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.056	0.053	0.891	0.133	0.629	0.238

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.530020703933747	0.213250517598344	0.0331262939958592	0.0165631469979296	0.0041407867494824	0	0.0020703933747412	0.200828157349896

Loading ...

Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.000906357 0.020427835 1.880528437 0.558938949 0.000000087 5.178930719 20.706608352 0.101982866 0.000043346 5.624076434 16.590198310 0.000008366 0.055424592 0.000000103 0.000102103 183.910490684 0.247446272 0.078576103 0.259137528 5.851764527 7.450271151 82.742196393 0.000611710 0.000386230 0.011107009 0.090623423 7.482189384 0.071944895 13.971002337 0.000000057 0.087746309 0.168356792 0.172667131 0.017860928 0.099945043 9.389114058 57.622910551 0.000000001 0.000106620 0.000309601 0.020332364 0.135438497 0.351153121 0.057355909 7.598931591 35.001198251 0.000196554 0.000240074 0.000095589 0.007959663 0.109436876 0.436572886 0.003265488 0.000731626 6.872734257 12.192678689 0.000000001 0.000000001 0.000000001 0.000000007 0.000915491 0.664976859 0.153077765 0.192575593 0.011315311 7.388370715 45.671259960 0.022090077 0.000000001 0.000989359 0.000000094 0.001602821 0.524970937 0.198357583 0.000404097 0.404133889 0.147474964 8.879695470 104.754059074 0.000000001 0.000000001 0.000000001 0.000009831 0.000239412 0.001857033 0.449063148 0.555810124 0.854672333 0.018736095 0.007462326 14.986868079 0.077912048 0.001465904 0.556033804 0.000000001 0.000000001 0.000000056 0.000000117 0.568653634 0.000001027 0.000000001 0.000000001 3.617279103 0.667086972 53.748699620 0.000059913 0.000000001 0.000000001 1.118705900 0.000000003 0.000000014 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000002 0.013921405 27.389094317 0.248888205 0.000953544 0.000000001 0.000000001 0.000000001 0.000000001 1.135714880 0.000000021 0.000008551 0.000000002 0.000000001 0.000000001 0.000000746 0.000016835 0.005395676 103.912825536 434.460487857 0.098015697 1.903747871 0.000000001 0.000000001 0.000000001 0.001517786 2.011558283 3.313909750 0.000000001 2.297033427 0.000000001 2.020467879 0.000000002 0.000000005 0.000000033 0.000000067 0.000000126 0.000657600 0.000000001 0.000031986 1.938472053 0.000000001 0.000008149 0.000000002 0.000000137 6.057828951 0.429327486 0.000000016 0.000000004 0.000018793 0.003544841 0.000000106 0.027652304 0.000032232 308.538110620 0.000535551 0.000000001 0.907753435 0.000000006 0.000000001 1.243293683 0.000000011 0.000122069 0.000000072 0.000000001 0.000000001 0.000000002 0.023124310 3.496703987 0.001739633 93.986638471 0.105912150 0.000000129 606.711862441 0.000001669 0.122096000 0.094581300 0.086620800 0.089576400 0.074534200 0.086794900 0.067924300 0.077124000 0.074975400 0.087604700 0.061892100 0.047822400 0.019417400 0.003052270 0.001484860 0.000795176 0.000777959 0.000482936 0.002441590