Protein GFER

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSCSAP00000007365	pdb,3tk0,A,#1	81	205	2.01e-88	96.8
ENSANAP00000033691	pdb,3tk0,A,#1	82	206	4.49e-88	96
ENSPPAP00000004594	pdb,3tk0,A,#1	72	196	1.22e-87	96
YGR029W	pdb,4e0i,B,#1	70	188	1.71e-87	99.16
YGR029W	pdb,4e0i,C,#1	71	188	8.27e-87	99.153
YGR029W	pdb,3w4y,B,#1	73	188	1.42e-86	100
YGR029W	pdb,3w4y,C,#1	73	188	1.53e-86	100
ENSFCAP00000007862	pdb,3tk0,A,#1	83	207	6.61e-86	92.8
ENSFDAP00000003014	pdb,3tk0,A,#1	1	125	1.84e-84	90.4
YGR029W	pdb,3w4y,A,#1	76	188	8.09e-84	100
ENSSTOP00000022333	pdb,3tk0,A,#1	82	206	2.69e-83	89.6

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.035	0.13	0.834	0.126	0.19	0.684

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.17169373549884	0.0765661252900232	0.08584686774942	0.0301624129930394	0.0139211136890951	0.0116009280742459	0.00928074245939675	0.60092807424594

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

28.238801443 0.000000518 3.208264192 0.000002048 0.432030362 3.127018740 0.000026454 0.329096898 0.946849325 3.323783860 0.000000345 0.000000173 0.003446817 0.711768720 1.211168998 0.000041248 0.082430320 0.817831938 1.378471974 2.337148498 3.870795921 0.000000345 0.036255602 0.089847387 0.275926729 0.704890944 3.647798029 0.765946512 0.000000345 0.000000002 0.063816446 0.200291972 0.307989094 2.076370383 0.668035471 3.592754466 0.000000345 0.000000002 0.000025456 0.041010232 0.660460596 0.738943197 0.300020798 0.549584575 4.575359025 0.000000345 0.068909021 0.000000002 0.035296281 0.111932160 0.157234561 0.000681111 0.757506570 1.576164466 4.644840769 0.000018614 0.000370286 0.000008326 0.000019655 0.180119237 0.471251825 0.026138889 0.073707613 0.296357169 1.418020793 2.578141543 0.000055623 0.000208349 0.000001974 0.055489758 0.041247937 0.307568394 0.368245003 0.246256773 0.146658172 0.689624085 1.742525075 2.758720991 0.000001080 0.001963788 0.156734592 0.125841204 0.001335157 0.090094451 0.003282569 0.095864119 0.254205321 1.356862282 0.311728902 1.112815113 3.899114063 0.002207786 0.365304026 0.000000006 0.027504496 0.156773782 0.001975460 0.009699075 0.004182972 2.023680729 0.030099759 0.466504903 1.148157801 1.743204738 5.616959527 0.000000345 0.000000002 0.000000002 0.000000002 0.000000002 0.222780949 0.000000002 0.000000002 0.000000434 0.030596568 0.001329325 0.060089139 0.440384522 0.911219164 6.216459575 0.000000345 0.000000002 0.000000002 0.239711906 0.000000002 0.000000002 0.260986673 0.000000002 0.000000001 0.000000001 0.000000001 0.000000001 0.272150852 0.491867144 0.000064683 10.153253739 0.000000345 0.000000002 0.301348405 0.837752252 0.000000180 0.000000011 0.307944851 0.000021181 0.000100298 0.881044196 0.000018256 0.000709167 0.000010622 0.000066465 11.761606918 0.000000289 21.693459721 0.000000345 0.000000002 0.000000061 0.000003929 0.011737282 0.014467794 0.001011922 0.004238716 3.586651538 0.108596945 3.333866305 0.060875540 0.119567437 0.042342648 0.076310413 0.792622794 1.647969308 27.794694753 0.000000345 0.000000002 0.067028233 0.278915970 0.088014045 0.186591956 0.000000002 0.000000002 0.000009742 0.017589644 0.013442657 0.122697512 0.156262338 0.456283089 0.631335880 2.382370679 0.000000017 1.822839265 12.932791983 0.000290149 0.060443900 0.065944600 0.054662700 0.051863200 0.061767400 0.058177300 0.065872300 0.079583700 0.077977700 0.092562800 0.095918000 0.102829000 0.077801700 0.014293200 0.008655580 0.006057540 0.007415300 0.001389120 0.016495100