Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSCSAVP00000014545pdb,1wdt,A,#1197098.48e-9330.286
ENSCSAVP00000014545pdb,2dy1,A,#1197098.48e-9330.286
ENSXETP00000061850pdb,2dy1,A,#1487213.61e-9231.232
ENSXETP00000061850pdb,1wdt,A,#1487213.61e-9231.232
ENSTRUP00000023241pdb,1wdt,A,#1447315.73e-9229.539
ENSTRUP00000023241pdb,2dy1,A,#1447315.73e-9229.539
ENSXMAP00000000265pdb,2dy1,A,#1447318.52e-9229.107
ENSXMAP00000000265pdb,1wdt,A,#1447318.52e-9229.107
ENSTNIP00000010546pdb,2dy1,A,#1447311.92e-9129.251
ENSTNIP00000010546pdb,1wdt,A,#1447311.92e-9129.251
ENSOPRP00000009015pdb,1wdt,A,#1367243.93e-9131.133

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0690.0820.8490.2440.4970.259

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.620046620046620.2435897435897440.01282051282051280.0011655011655011700.001165501165501170.001165501165501170.12004662004662

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)