Protein GLDC

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
FBpp0081703	pdb,1wyv,D,#1	507	902	1.74e-78	42.298
FBpp0081703	pdb,1wyv,B,#1	507	902	1.74e-78	42.298
FBpp0081703	pdb,1wyu,H,#1	507	902	1.74e-78	42.298
FBpp0081703	pdb,1wyu,D,#1	507	902	1.74e-78	42.298
FBpp0081703	pdb,1wyu,F,#1	507	902	1.74e-78	42.298
FBpp0081703	pdb,1wyv,F,#1	507	902	1.74e-78	42.298
FBpp0081703	pdb,1wyv,H,#1	507	902	1.74e-78	42.298
FBpp0081703	pdb,1wyu,B,#1	507	902	1.74e-78	42.298
FBpp0081703	pdb,1wyt,D,#1	507	908	1.8e-78	41.928
FBpp0081703	pdb,1wyt,B,#1	507	908	1.8e-78	41.928
ENSAMEP00000016713	pdb,1wyt,B,#1	511	903	1.06e-77	43.457

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.024	0.055	0.921	0.167	0.485	0.347

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.631665299425759	0.187038556193601	0.0172272354388843	0.00328137817883511	0.00656275635767022	0.007383100902379	0.00656275635767022	0.140278917145201

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

6.099605036 1.722951256 1.494408889 0.005148851 0.000027481 5.219284348 6.452785228 0.167622110 0.018342131 6.359131320 0.000002908 0.007620644 0.092943629 0.176386344 0.033235403 0.061412541 0.144792583 0.062083747 0.429957408 5.889304460 8.389564572 0.000000149 0.000182491 0.000033089 0.171729548 0.078219277 9.183548417 0.110917070 0.000000149 0.000070126 0.017188616 0.039700877 0.162127002 0.399256027 0.214403845 9.664195892 0.000000149 0.013780016 0.000000025 0.000020585 0.147050799 0.059113546 0.040066571 0.001692212 9.482172694 0.000000149 0.004450342 0.026498494 0.000000001 0.223396663 0.014810633 0.089022529 0.154750664 0.001568797 9.009719697 0.000000149 0.000000001 0.000322758 0.000000001 0.069827357 0.064131464 0.207955699 0.100082760 0.000000298 0.000587008 10.056333885 0.000000149 0.000000001 0.000000001 0.000000008 0.148844079 0.000535474 0.001816258 0.111747103 0.205653035 0.000000002 0.002773162 15.506885890 0.000000149 0.000000001 0.000000001 0.592003701 0.005746203 0.000000202 0.076102951 0.000177972 0.282709940 0.363602654 0.000057269 0.000000042 63.326896946 0.000000149 0.000000001 0.000000001 0.000000001 0.625381467 0.000000001 0.000000158 0.000000001 0.000000002 0.000000002 0.000000002 0.052570166 4.341450333 183.434148344 0.361985403 0.001601530 0.075939057 0.872864569 33.034031674 7.579636679 20.008955759 4.104564036 0.651958239 0.742122845 0.487268224 0.020613527 0.004315264 0.011413869 0.000008135 0.000459698 0.000000037 0.000026153 0.000426928 21.049769177 0.002005930 0.220686807 0.003837787 0.000953342 0.022178105 6.540634343 34.419689804 0.057535519 0.000122415 0.000000486 77.388594260 0.000000149 0.000000001 0.000000001 0.000000001 0.590134699 0.000000001 0.000716573 0.000000001 0.000000002 0.000000002 2.354533745 0.000000003 0.000000006 3.028526022 166.745553344 0.000305206 0.000962725 0.000000149 0.000000001 0.000000018 0.000092500 1.365702722 0.000019605 0.003207784 0.000017564 0.007508879 13.360662462 0.000684922 0.000000179 0.000211007 0.014143554 0.000000116 17004.673401805 0.112067713 0.000000279 0.000000149 0.000000001 0.000000001 0.000000001 0.000000001 0.000001476 0.000000001 1.064682178 0.318277258 0.000000002 0.000000002 0.000000732 3.058755870 0.000000038 0.000000116 0.000001500 0.000001109 0.000000279 0.000003243 0.000668922 0.197814000 0.121819000 0.086024800 0.110691000 0.080782500 0.100494000 0.072015200 0.065295900 0.060948400 0.050307200 0.031760600 0.016779600 0.002630230 0.000861996 0.000066675 0.000090192 0.000358149 0.000170046 0.000421389