Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSCCAP00000011724pdb,3mw9,D,#156493074.008
ENSRBIP00000006282pdb,1nqt,H,#131509089.718
ENSANAP00000034235pdb,3qmu,C,#182535085.895
ENSTRUP00000000720pdb,3qmu,F,#150547087.751
ENSCINP00000014974pdb,3mw9,D,#13505072.673
ENSONIP00000019996pdb,1nr7,D,#147542089.919
ENSMLUP00000022149pdb,1nr1,B,#161439076.396
ENSMODP00000034856pdb,1nqt,D,#166561090.524
ZK829.4.2pdb,1nr7,L,#140536063.2
ZK829.4.2pdb,3mw9,D,#140536063.4
ENSDARP00000135641pdb,1nr7,F,#147542087.903

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.190.5560.2540.4260.4260.148

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.5317982456140350.02412280701754390.02960526315789470.005482456140350880.01206140350877190.003289473684210530.006578947368421050.387061403508772

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)