Protein GPT2

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
FBpp0073600	pdb,3tcm,B,#1	101	575	1.59e-153	46.778
FBpp0073600	pdb,3tcm,A,#1	101	575	1.59e-153	46.778
C32F10.8a.3	pdb,3tcm,A,#1	28	504	2.38e-153	45.021
C32F10.8a.3	pdb,3tcm,B,#1	28	504	2.38e-153	45.021
ENSCINP00000006900	pdb,3tcm,A,#1	18	494	5.74e-153	46.377
ENSCINP00000006900	pdb,3tcm,B,#1	18	494	5.74e-153	46.377
ENSXMAP00000017242	pdb,3tcm,A,#1	41	515	7.18e-152	46.362
ENSXMAP00000017242	pdb,3tcm,B,#1	41	515	7.18e-152	46.362
ENSTNIP00000017885	pdb,3tcm,B,#1	24	498	1.26e-151	46.57
ENSTNIP00000017885	pdb,3tcm,A,#1	24	498	1.26e-151	46.57
ENSORLP00000022172	pdb,3tcm,A,#1	71	546	3.18e-151	45.851

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.062	0.139	0.8	0.044	0.555	0.402

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.311246730601569	0.114210985178727	0.00523103748910201	0.00523103748910201	0.015693112467306	0.00523103748910201	0.002615518744551	0.540540540540541

Loading ...

Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.007696107 0.422596959 1.664106677 15.134779372 0.000229635 4.964671488 67.846430878 0.148049350 0.007529565 6.183897643 38.971079220 0.007642374 0.186048489 0.122067256 0.185648940 35.262936083 0.127894388 0.021502667 0.190945485 5.951989869 8.167143777 30.750495331 0.010263844 0.001316780 0.007865035 0.197091985 8.675519457 0.007808903 14.475167756 0.025453583 0.004635399 0.032976540 0.330851235 0.384056760 0.007386373 8.292941503 8.848751546 0.000061702 0.015955961 0.052612175 0.014594135 0.137174869 0.180325638 0.028590112 7.275330870 29.104681839 0.000019581 0.016995906 0.007763714 0.308544480 0.293367941 0.007659746 0.019836630 0.006960509 6.720006656 24.627598437 0.018776036 0.000016806 0.000681124 0.078111066 0.319712638 0.178009902 0.151017132 0.122426116 0.003016227 8.175018731 9.488659376 0.027793434 0.031104299 0.000008434 0.229620739 0.014065389 0.014831574 0.000004019 0.092007448 0.118964133 0.012807220 10.513548321 24.961303953 0.014249190 0.071129372 0.000000005 0.012947142 0.492924160 0.039032962 0.377385010 0.087743446 0.000026039 0.000029923 0.000076776 22.943531878 271.580572067 0.000000001 0.545115641 0.000090236 0.000162978 1.766453451 0.893110080 0.000176165 0.627563638 0.000085289 1.297161987 0.000006121 0.463864005 94.692616737 3538.444276597 0.536030819 0.350617724 1.035764783 0.907318710 4.139927954 1.107723374 0.149022783 1.882743716 0.017525991 2.167263604 0.329017048 6.754761632 12.017729510 190.886171783 4197.399100194 0.000000382 0.704410111 2.687717040 1.723355795 0.167779315 0.099207797 0.037298867 1.681638113 1.190809734 0.260967543 6.201470912 1.149084522 14.946099712 1.577067797 113.816574275 0.545855090 0.418970760 0.005209400 0.000519312 1.229163320 0.000000083 0.000053357 1.696202102 0.000000001 0.000000001 1.707124121 0.000000002 0.000068830 0.006492985 201.614869213 0.024903866 0.004302206 2.232058608 0.000043873 0.933737278 0.211249370 0.005798546 0.000127233 0.000582268 0.000073719 1.823151283 0.000002475 1.285812246 0.000000423 0.035715227 75.454903976 0.002426407 0.234591958 153.173508198 0.000002743 2.464587917 0.000000001 0.000000001 0.000003359 0.485011010 0.000000008 0.747978347 0.000000001 0.185453160 0.495860534 0.601233140 0.926109115 0.000000004 0.000001584 13.165385926 0.000007822 15.500064479 35.134380064 336.672506283 0.000003654 0.161459000 0.099947600 0.078009700 0.105811000 0.073009000 0.094786300 0.070649600 0.079540300 0.082933400 0.069270300 0.047208800 0.024424400 0.006364530 0.001320850 0.001425100 0.000566077 0.000590601 0.000698676 0.001980410