Protein GPX4

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSNLEP00000005555	pdb,2i3y,A,#1	31	218	3.05e-140	98.936
ENSRBIP00000043683	pdb,2r37,B,#1	36	222	3.33e-136	96.809
ENSRBIP00000043683	pdb,2r37,A,#1	38	222	4.38e-135	97.312
ENSPVAP00000010738	pdb,2he3,A,#1	4	187	1.28e-134	96.196
ENSTTRP00000016459	pdb,1gp1,A,#1	17	200	1.12e-131	95.652
ENSPVAP00000007610	pdb,2r37,B,#1	35	222	1.12e-130	92.553
ENSSSCP00000042853	pdb,2f8a,A,#1	17	200	1.38e-130	95.109
ENSSSCP00000042853	pdb,2f8a,B,#1	17	200	2.45e-130	95.109
ENSNGAP00000000794	pdb,2he3,A,#1	4	186	4.04e-130	95.652
ENSCJAP00000034567	pdb,2i3y,A,#1	31	218	7.66e-130	90.426
ENSPVAP00000007610	pdb,2r37,A,#1	37	222	9.15e-130	93.011

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.087	0.217	0.696	0.027	0.007	0.965

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.0920245398773006	0.191717791411043	0.053680981595092	0.0368098159509202	0.00766871165644172	0.00613496932515337	0.00153374233128834	0.610429447852761

Loading ...

Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.621940829 0.088841082 2.701756205 0.020231165 0.402913182 4.972161035 0.266319715 0.265594377 0.693044569 4.588737659 0.224087319 0.135519640 0.595912889 0.704374070 1.368594089 0.339897403 0.371179272 0.579218428 1.588200105 4.649647063 6.155702544 0.094041710 0.139657944 0.164941037 0.303340416 0.574879770 5.409625914 1.307474799 0.001445821 0.028354011 0.133520165 0.022990450 0.499214176 1.970593348 0.742049822 5.510334174 0.018554621 0.076789352 0.134326202 0.326793938 0.059673997 0.549977962 0.661672256 1.072003926 6.755147176 0.004241857 0.011490960 0.201668257 0.114614554 0.209514096 0.796549669 0.562949387 0.675843483 1.163530000 6.808545352 0.024598117 0.108202538 0.094633456 0.042350138 0.107521720 0.287807444 0.474275673 0.382990071 0.478032789 1.001533657 5.983700069 0.000218819 0.055109957 0.126987446 0.144933766 0.027577716 0.189041878 0.041570382 0.270995360 0.288027938 0.425590657 1.490887653 5.942612168 0.000000001 0.075409423 0.001391230 0.006190597 0.079488926 0.187306780 0.442978062 0.073189685 0.213231550 0.187073580 0.544291837 0.965529861 6.655855770 0.025204042 0.000368492 0.198413194 0.026901618 0.207614134 0.171652099 0.151632364 0.149949745 0.530724868 0.454103066 0.546673890 0.755002125 2.629532031 6.998858615 0.000000019 0.005900953 0.104256255 0.039394772 0.000693740 0.198814608 0.370935123 0.011652379 0.332881364 0.004053467 0.413962493 0.262662156 1.003499630 1.082027569 6.127639869 0.000000039 0.000000486 0.221048517 0.000205302 0.029733185 0.023350726 0.824941460 0.267555631 0.000101470 0.385926955 0.542910406 0.919468486 0.277414765 0.677093272 0.437580754 4.918288697 0.085422922 0.079147007 0.206070767 0.000000906 0.000004535 0.021314701 0.009619982 0.418234662 0.000118484 0.494687530 0.324085021 0.947066185 0.968407936 0.447996722 4.037229724 1.379815276 13.450001860 0.000000006 0.000499353 0.091742692 0.000204820 0.016443636 0.331040562 0.452133611 0.716913522 0.015724010 0.044669441 1.371794586 0.704839210 1.723262904 1.729992098 3.809174794 3.198066572 0.000146373 16.942438267 0.000000050 0.050000296 0.060456630 0.061338930 0.000062725 0.019110134 0.356152845 0.409248767 0.058841121 0.640487138 0.372806361 0.504749152 1.095217371 0.850469724 1.135598065 1.069157845 1.473254698 2.121961159 15.166067425 0.068539800 0.135007000 0.067279800 0.059342900 0.065790800 0.064434400 0.070165100 0.063377100 0.066376200 0.070485100 0.062761000 0.059294800 0.050319600 0.034169000 0.017491400 0.012299400 0.006718750 0.005226910 0.006811390 0.014109200