Protein GTPBP3

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
YMR023C	pdb,1xzq,A,#1	38	526	9.06e-71	33.063
YMR023C	pdb,1xzp,A,#1	38	526	9.27e-71	33.063
ENSMAUP00000020005	pdb,1xzq,A,#1	15	474	1.39e-62	32.976
ENSMOCP00000016145	pdb,1xzq,A,#1	34	494	1.44e-62	34.115
ENSMAUP00000020005	pdb,1xzp,A,#1	15	474	1.53e-62	32.976
ENSMOCP00000016145	pdb,1xzp,A,#1	34	494	1.94e-62	34.115
ENSMPUP00000015783	pdb,1xzp,A,#1	37	496	2.19e-62	33.049
ENSMPUP00000015783	pdb,1xzq,A,#1	37	496	2.29e-62	33.049
ENSPEMP00000011073	pdb,1xzp,A,#1	35	494	6.8e-61	32.762
ENSPEMP00000011073	pdb,1xzq,A,#1	35	494	8.75e-61	32.762
ENSSSCP00000045883	pdb,1xzq,A,#1	37	494	8.84e-61	32.627

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.037	0.065	0.898	0.057	0.466	0.477

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.430686406460296	0.227456258411844	0.00672947510094213	0.0215343203230148	0.0255720053835801	0.0107671601615074	0.00269179004037685	0.274562584118439

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.012543689 0.728310951 2.102422608 12.152351902 0.020705671 6.392900502 105.965944117 0.046498053 0.114747738 4.208558542 74.943034709 0.002232248 0.006927839 0.155863716 0.097757740 134.098806811 0.106343234 0.205158260 0.814002456 4.305632260 6.268088212 96.948760919 0.000039397 0.125617701 0.260292537 0.025162597 7.142668942 0.238321760 19.397377998 0.000009856 0.002225857 0.060062917 0.290798019 0.926796065 0.027579510 7.460392131 20.951171955 0.001823527 0.000000001 0.000000008 0.013338861 0.279676169 0.394828403 0.018023379 6.155600947 6.404816592 0.013500624 0.114348976 0.000007241 0.011302855 0.602720132 0.021303971 0.005828046 0.030198331 7.267667374 1.300603216 0.000338537 0.000000059 0.000000001 0.004816130 0.235282678 0.001539878 0.273656185 0.000214028 0.000523440 6.843685705 0.050309827 0.038548177 0.000486123 0.000000001 0.136058961 0.000000001 0.000000005 0.243631400 0.116640502 0.026324156 0.002663618 13.944145482 0.000045664 0.000000001 0.278289283 0.000000001 0.480917267 0.000000001 0.000000001 0.000000001 0.000000001 0.546355079 0.144923054 0.000000003 32.010328348 0.000045664 0.443096925 0.000000001 0.000000001 0.000000116 1.372382960 0.000000001 0.000000001 0.000000001 0.000000001 0.000000002 1.021719079 26.114261123 87.437515834 0.000045664 0.000000001 0.000000001 0.000000001 1.955494192 0.000000112 0.000000001 0.000000001 0.000000001 0.000000001 0.000000002 0.000024505 3.040460246 0.003791873 1101.527457613 3.077705680 0.000000001 0.000000001 0.000000001 0.000000020 0.030533425 1.212386316 0.016877462 0.155889725 0.000000001 0.000000002 0.000000003 3.133052978 0.000021699 0.000000144 0.000002169 0.000045664 0.000000001 0.257307261 0.177602846 0.000000001 0.000000001 0.000000001 0.000000001 0.397052462 0.000000001 0.000000002 0.000000003 0.000000008 0.000000027 0.000000144 0.000000298 149.895696408 0.000045664 0.750116706 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000002 0.000000003 0.000000008 0.000000027 194.036667600 44.740207667 17.763556412 215.866252844 3391.172320576 5.853584443 0.121450632 0.016083066 16.938740879 6.461464790 2.187990960 0.151955590 0.059198068 2.095425851 13.902104872 0.000402683 0.011359522 140.341548327 0.000000144 0.000000827 0.000000175 0.000000078 0.000000312 0.000002190 0.143523000 0.078743600 0.075559600 0.129646000 0.095642400 0.109734000 0.079927300 0.089688400 0.078064800 0.062407600 0.036645200 0.013245100 0.003670930 0.000696255 0.000335441 0.000572847 0.001279130 0.000320737 0.000294763