Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
YLR289Wpdb,1eft,A,#1363063.07e-1930
YLR289Wpdb,1b23,P,#1363068.81e-1929.667
YLR289Wpdb,1ttt,B,#1363068.81e-1929.667
YLR289Wpdb,1ttt,C,#1363068.81e-1929.667
YLR289Wpdb,1ttt,A,#1363068.81e-1929.667
YLR289Wpdb,2c77,A,#1483061.16e-1829.861
YLR289Wpdb,1ob5,A,#1483061.39e-1829.861
YLR289Wpdb,1tui,C,#1483061.49e-1829.861
YLR289Wpdb,1tui,B,#1483061.49e-1829.861
YLR289Wpdb,1tui,A,#1483061.49e-1829.861
ZK1236.1pdb,4b3x,A,#1472541.58e-1833.484

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0220.0270.9520.1580.5060.336

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.4687868080094230.2697290930506480.04358068315665490.004711425206124850.002355712603062430.0035335689045936400.207302709069494

Loading ...

Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)