Protein HADH

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSCPOP00000015742	pdb,3hdh,A,#1	23	313	0	89.691
ENSNGAP00000026272	pdb,1f0y,B,#1	24	314	0	91.753
ENSSSCP00000053505	pdb,3hdh,B,#1	24	314	0	100
ENSFDAP00000006343	pdb,1f17,B,#1	1	270	0	88.889
ENSCPOP00000015742	pdb,1il0,B,#1	23	313	0	89.691
ENSSTOP00000001224	pdb,1lsj,B,#1	24	314	0	92.784
ENSSHAP00000005708	pdb,1il0,A,#1	27	317	0	82.818
ENSCJAP00000029358	pdb,1f0y,B,#1	83	390	0	88.961
F54C8.1	pdb,4j0e,A,#1	1	296	0	100
ENSBTAP00000002654	pdb,1m76,B,#1	24	314	0	90.378
ENSMUSP00000029610	pdb,1f14,B,#1	24	314	0	90.378

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.279	0.36	0.361	0.159	0.388	0.453

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.394520547945205	0.0301369863013699	0.00273972602739726	0.0205479452054795	0.0232876712328767	0.0726027397260274	0.102739726027397	0.353424657534247

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

1.225632992 0.000014847 0.944099612 0.076153003 0.280298837 3.349182814 0.080341350 0.660387642 1.008857595 2.349943212 0.000002512 0.314988841 0.362580477 0.301548773 1.752012948 0.041877323 0.369392224 0.203667764 1.938938317 3.531546056 2.785875332 0.000000659 0.143271702 0.337975614 0.407450929 0.991104673 2.151723978 0.930802996 0.000000009 0.224724069 0.162422887 0.759621797 0.235921840 1.759230584 0.628217405 2.554570435 0.000000002 0.041493434 0.179335900 0.160447225 0.439454087 0.472951501 0.815112509 0.815442989 3.964159785 0.000000002 0.038497827 0.139547882 0.063971399 0.354453432 0.137777598 0.353649674 0.321770314 1.289252468 4.247181035 0.000000002 0.058165629 0.071794006 0.057837706 0.078767377 0.063950143 0.218901452 0.950183413 0.649070457 1.718957846 6.584783125 0.000000002 0.055437566 0.093745730 0.094500577 0.002450838 0.832400893 0.269086901 0.002360788 1.289024048 1.157455582 2.340648607 7.929891631 0.000000002 0.002058160 0.000017807 0.000223318 0.405566089 0.000137607 0.024105689 0.349111387 0.179399400 0.132619886 1.139568476 3.157470578 6.898012338 0.000000002 0.000000895 0.001560430 0.000002090 0.000232049 0.171707539 0.000098529 0.000011119 0.000353645 1.295539969 2.020342972 0.299573628 0.849898082 6.170658762 0.000000002 0.000000195 0.145399899 0.000006171 0.000233809 0.705430249 0.001087431 0.270773620 0.000395350 0.001500088 2.263787323 1.334678181 0.002731552 2.206940832 1.526262411 0.000000002 0.000000009 0.004018432 0.016725269 0.280287769 0.000027578 0.104530374 0.000003367 0.080214824 0.209565243 0.215445422 1.590763365 0.900225944 1.045564681 2.615115465 1.149902169 0.000000002 0.000000000 0.000000001 0.000000002 0.056192894 0.000000001 0.000000001 0.000000002 0.000000002 0.612964772 0.977149042 0.165575930 0.000024716 0.000008691 0.021885985 4.297175488 5.725395527 0.000000002 0.000000000 0.000000001 0.000000002 0.377808927 0.000458195 0.000000029 0.000001447 0.000055294 0.000001456 0.000019542 0.160953331 2.608280667 1.374843199 0.000001146 2.611847379 7.010579782 2.668340360 0.000000002 0.000000000 0.000000004 0.000000099 0.136298078 0.010480639 0.311996578 0.256507301 0.000008089 0.001185540 0.401504037 0.053338320 0.488745929 3.374123566 0.284276022 1.462638228 0.001304829 6.990991371 14.472444139 0.048835500 0.212825000 0.077289600 0.066123300 0.064134800 0.069101800 0.082286800 0.052368100 0.055161500 0.050683500 0.053030600 0.039707100 0.037088800 0.030293200 0.019720200 0.008657780 0.012344300 0.008050060 0.006359990 0.005938480