Protein HADHA

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSFDAP00000006343	pdb,3hdh,B,#1	1	270	0	88.889
ENSPVAP00000015220	pdb,1il0,A,#1	79	386	0	82.468
ENSRNOP00000002410	pdb,3zwc,B,#1	1	718	0	100
ENSSTOP00000001224	pdb,1lsj,B,#1	24	314	0	92.784
ENSMEUP00000003987	pdb,1m75,A,#1	52	359	0	78.896
ENSMODP00000025773	pdb,1lsj,B,#1	27	317	0	84.88
ENSMEUP00000003987	pdb,1il0,B,#1	52	359	0	78.896
ENSMAUP00000016620	pdb,1lsj,A,#1	31	300	0	89.63
ENSECAP00000021102	pdb,3zwa,B,#1	1	718	0	75.627
ENSDNOP00000000662	pdb,1f0y,A,#1	26	295	0	92.963
ENSJJAP00000013798	pdb,1m76,A,#1	24	314	0	87.973

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.028	0.192	0.78	0.058	0.394	0.548

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.245960502692998	0.368043087971275	0.0754039497307002	0.0251346499102334	0.0107719928186715	0.000897666068222621	0.000897666068222621	0.272890484739677

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.472051096 0.000066714 1.583588414 0.001779221 0.011208050 5.863335184 0.243299023 0.229516428 0.216207692 7.185582201 0.000244920 0.009822223 0.036111858 0.151323272 0.438416189 0.179885222 0.340932463 0.415910437 0.581962146 6.851790437 8.329532103 0.000000622 0.022853380 0.050053713 0.244279425 0.196700839 9.636884265 0.478415113 0.000000003 0.005583518 0.014217810 0.090437750 0.216845911 0.740848250 0.544447380 8.218608336 0.005833345 0.018840151 0.013137732 0.079185660 0.200567556 0.593395752 0.432864293 0.166714377 7.303775511 0.000007503 0.006883196 0.034519208 0.053238933 0.214823264 0.325180677 0.213578864 0.387282633 0.308575385 7.463323149 0.000127823 0.005534462 0.014776355 0.040162262 0.128984097 0.176603394 0.357875924 0.309126654 0.283805064 0.183836030 8.977025332 0.000000003 0.017045593 0.006746066 0.068112878 0.080370369 0.087020798 0.262787169 0.346110679 0.033241343 0.412520954 0.138702003 8.091061274 0.000000003 0.012391321 0.003232123 0.000174338 0.020422411 0.060999513 0.124861778 0.090283401 0.228202474 0.126688502 0.427529192 0.740808894 12.608924427 0.022706420 0.000017474 0.089885090 0.000002007 0.030064300 0.000000365 0.126945924 0.000001414 0.000006112 0.260100995 0.000356903 0.756493515 0.568773222 11.608959317 0.000000003 0.007024985 0.030785722 0.090226182 0.096498817 0.000002492 0.157201703 0.009128214 0.000003558 0.092122353 0.176006668 1.018554725 0.036232282 1.593679720 5.181911680 0.000000003 0.006489141 0.000000001 0.110271977 0.103170513 0.038333882 0.000747461 0.000273416 0.111914881 0.073584345 0.246875395 0.247931250 0.369140581 0.974816395 1.467129777 7.377904463 0.000000003 0.000000001 0.000000354 0.080870998 0.233033156 0.832450445 0.000043500 0.000005984 0.000000001 0.252908290 0.451003932 0.005770545 1.714389936 2.379558129 0.010684993 3.149973254 13.803514805 0.000000003 0.000000001 0.067654100 0.000145740 0.024572420 0.388191658 0.000173138 0.046303642 0.000000007 0.000000001 0.149532004 0.646241135 1.238686289 0.038307177 4.166314246 0.011607472 4.114627149 3.765475477 0.000000003 0.008491684 0.000000026 0.000025634 0.315008036 0.001009948 0.214082660 0.295585939 0.097647176 0.000625843 0.262753088 0.290407003 0.376652388 0.842974250 0.329807040 0.000965841 3.434623574 1.392777422 17.652932944 0.028698800 0.198957000 0.085919700 0.066645400 0.082317900 0.073791900 0.085550600 0.066023100 0.070043500 0.067290400 0.059391500 0.039127500 0.030977900 0.016407500 0.007992340 0.004094130 0.006490260 0.003870640 0.002951130 0.003459140