Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
YKR070Wpdb,3rf6,A,#113352099.706
YKR070Wpdb,3rf6,B,#11352099.716
ENSTNIP00000009427pdb,3rf6,A,#1233393.16e-4030.792
ENSTNIP00000009427pdb,3rf6,B,#1233393.99e-4030.792
ENSGMOP00000017836pdb,3rf6,A,#163143e-3929.412
ENSGMOP00000017836pdb,3rf6,B,#163143.18e-3929.412
ENSLACP00000012490pdb,3rf6,A,#192813.21e-3831.313
ENSLACP00000012490pdb,3rf6,B,#192814.23e-3831.313
ENSONIP00000013181pdb,3rf6,B,#122841.03e-3731.27
ENSONIP00000013181pdb,3rf6,A,#1102842.1e-3731.773
ENSCINP00000017055pdb,3rf6,B,#1233123.15e-3631.034

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0340.0680.8970.090.4920.418

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.4548440065681440.1658456486042690.05747126436781610.01642036124794750.01642036124794750.01642036124794750.003284072249589490.269293924466338

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)