Protein HIGD1A

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSCANP00000017963	pdb,2lon,A,#1	1	99	8.48e-68	95.96
ENSCATP00000010138	pdb,2lon,A,#1	1	99	9.67e-68	95.96
ENSPTRP00000060206	pdb,2lom,A,#1	15	107	2.17e-65	100
ENSPPAP00000025615	pdb,2lom,A,#1	11	103	2.73e-65	100
ENSNLEP00000041005	pdb,2lom,A,#1	13	104	3.97e-64	98.913
ENSMNEP00000040495	pdb,2lom,A,#1	15	107	1.36e-63	94.624
ENSSBOP00000035141	pdb,2lon,A,#1	1	99	2.43e-63	89.899
ENSPVAP00000015244	pdb,2lon,A,#1	1	99	2.7e-62	88.889
ENSMLUP00000011067	pdb,2lon,A,#1	1	99	4.72e-62	87.879
ENSMICP00000042133	pdb,2lon,A,#1	1	99	1.37e-61	87.879
ENSOGAP00000011573	pdb,2lon,A,#1	1	99	4.78e-61	87.879

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.036	0.077	0.887	0.347	0.019	0.634

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.336538461538462	0.115384615384615	0.0240384615384615	0	0	0	0	0.524038461538462

Loading ...

Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

1.927627574 2.776192157 3.859575629 6.386888805 0.002524989 7.189176586 11.398909946 0.120538272 0.132634448 9.357060732 14.994479562 0.007921330 0.002377353 0.150781403 1.930035893 21.443032175 0.001303444 0.037328858 1.240886754 9.077542807 11.506245781 46.625928930 0.020333267 0.227592424 0.349865863 0.376182837 4.440444306 0.972412364 2.370775317 0.116601301 0.284269219 0.217169575 0.633728519 0.623027250 1.161610862 7.539110037 8.697073446 0.231473775 0.393954658 0.115499289 0.571504320 1.846143052 0.957419844 2.139171571 5.301124291 7.378442019 0.002947119 0.002426341 0.334328079 0.000395102 0.228918342 0.148433750 0.665467351 0.821037039 5.545153584 3.402158233 0.004182113 0.012148324 0.191009820 0.000196098 0.321357112 0.960401128 0.010915144 0.000870355 0.080927304 4.817252934 4.596306363 0.000290993 0.015154126 0.269630462 0.000308344 0.470338891 0.816481547 0.806590749 0.069192764 0.990616041 1.568135354 5.856236150 3.374855282 0.070088738 0.000234585 0.186802592 0.000426493 0.002546217 0.132787123 0.330703461 0.477023057 0.230795222 0.912668376 0.465349037 4.835317267 7.230453006 0.000318964 0.073631706 0.000622079 0.036515080 0.000777298 0.271229537 0.004939907 0.640513755 0.003290392 0.016700666 0.335893274 0.482404359 3.299470096 12.109281972 0.000396140 0.084336921 0.006145771 0.469090867 0.387828771 0.001132403 0.001616529 0.145229047 0.249360068 0.122966184 1.032071716 1.044145285 0.182951732 1.566822437 76.712625603 0.138615937 0.142075385 0.002380831 0.005336769 0.280069390 0.093402968 0.677303735 0.215943295 0.032374744 0.396923497 0.563513853 0.005517349 0.595362595 1.385823193 1.094242380 0.157449702 0.000216422 0.006145611 0.209860582 0.000030415 0.000012838 0.000011730 0.514727871 0.000164286 0.001195196 0.244252526 0.000689352 1.172171677 0.247204330 0.753106277 0.063280586 0.000059434 0.436417968 0.000051558 0.426435622 0.721246498 0.186128570 0.272411866 0.000101660 0.003826425 0.363155601 0.004332491 0.043600162 0.179960555 0.000045029 0.386626850 0.345973380 0.314497129 1.780277118 2.710614942 22.335588974 0.077056096 0.000129470 0.003775756 0.342344775 0.329295290 0.168025734 0.030846125 0.000060043 0.493750853 0.043927071 0.736945432 0.297282238 0.126471919 1.052658003 1.030781691 1.326861231 0.424131542 2.985011689 0.000048456 0.071852200 0.080203900 0.058708500 0.051486400 0.041331900 0.037165200 0.051029100 0.044285700 0.058600000 0.089413200 0.066472900 0.076993500 0.074239800 0.042027800 0.035313200 0.016635500 0.025743900 0.030283600 0.048165400