Protein HIGD2A

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSODEP00000012553	pdb,2lom,A,#1	30	100	2.57e-13	41.667
ENSMPUP00000012453	pdb,2lom,A,#1	32	103	2.57e-13	42.466
ENSACAP00000006178	pdb,2lom,A,#1	37	102	3.49e-13	46.269
ENSBTAP00000014213	pdb,2lom,A,#1	30	103	7.05e-13	41.333
ENSMICP00000042369	pdb,2lom,A,#1	23	100	7.6e-13	40.506
ENSLOCP00000014640	pdb,2lom,A,#1	43	114	7.97e-13	45.205
ENSSSCP00000027136	pdb,2lom,A,#1	30	103	8.56e-13	41.333
ENSECAP00000018368	pdb,2lom,A,#1	30	100	1.28e-12	41.667
ENSJJAP00000019109	pdb,2lom,A,#1	23	100	1.46e-12	41.772
ENSCGRP00001018865	pdb,2lom,A,#1	30	100	1.68e-12	41.667
ENSOGAP00000000734	pdb,2lom,A,#1	30	100	1.83e-12	41.667

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.047	0.108	0.845	0.064	0.248	0.688

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.413265306122449	0.11734693877551	0	0	0	0.00510204081632653	0	0.464285714285714

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.000145893 0.000145893 1.216183015 0.000145893 0.000000001 2.022484098 0.000145893 0.000000001 0.000000001 4.797960456 11.850226499 0.000000001 0.000000001 0.000149943 0.446238155 0.000145893 0.151486285 0.000000001 0.149339483 5.703150482 5.786947489 27.305141990 0.034608062 0.000000001 0.000000002 0.203566978 6.866040635 0.015310958 0.400344307 0.000000001 0.003096361 0.000000003 0.040122231 0.149314830 0.000667092 6.014725911 0.001300695 0.000025064 0.000005598 0.000000769 0.000000002 0.402764071 0.152120680 1.282157044 5.754631986 0.065846069 0.000000001 0.003890326 0.031082979 0.000000002 0.093739976 0.000000093 0.131529164 0.357544207 7.397807626 0.011376980 0.000000001 0.002023819 0.127739542 0.000000002 0.000000001 0.000000002 0.007173170 0.003965259 0.000344983 6.300140051 0.014609409 0.000000001 0.000000001 0.000002074 0.000000002 0.014248594 0.062624037 0.083233963 0.378844141 0.114918386 0.080780257 9.944778223 0.666527096 0.000000001 0.000000001 0.059136732 0.000000002 0.288898538 0.000000002 0.000001241 0.226904421 0.000514715 0.002745698 0.000156871 6.074650017 28.328871447 0.000000001 0.000000001 0.000000002 0.000000002 0.000235006 0.000000002 0.000000487 0.000021718 0.000000008 0.000000138 0.000000002 0.008450608 15.193992349 1523.091175677 0.000000001 0.000000001 0.000000002 0.000000002 0.000732714 0.000000002 1.778105997 0.116201627 0.000000110 0.000000025 0.000000001 0.000000092 1.576383639 51.440672013 0.002689241 0.000000001 0.000000001 0.000000002 0.000000002 1.622682170 0.000000002 0.000000651 0.000002213 0.000000040 0.000000195 1.044140600 0.924416369 0.000000002 0.000000005 0.000000016 0.000145893 0.000000001 0.000000001 0.000000002 0.000000002 0.000059374 0.000000002 0.000000001 0.000000001 0.000000001 0.000000001 0.053041136 1.468372807 0.000000002 0.000000005 0.000000016 488.058612640 27.341615179 0.247301585 0.000000001 0.000000002 0.762701871 0.463139135 0.000000005 0.000008445 0.000003653 0.000000040 0.000004674 0.001795541 0.000032608 1.552948367 0.004614145 0.121406870 0.000807570 45.877449010 435.946515716 0.000000001 0.000000001 0.000000002 0.000000002 0.019474525 0.000000003 0.000028612 0.000000046 0.000000214 0.433588222 0.117097988 0.000069950 0.004455531 4.520026897 21.636502236 0.000688119 0.000700790 47.154934835 0.000000685 0.073589500 0.083890400 0.054835800 0.047827600 0.068399100 0.058823100 0.077387400 0.104113000 0.089647100 0.081970400 0.097769400 0.061374400 0.044177000 0.019928200 0.006362350 0.001439280 0.005721700 0.007072070 0.015671800