Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSSARP00000007997pdb,1xqu,A,#1351422.31e-1732.456
ENSSARP00000007997pdb,1xqu,B,#1351422.64e-1732.456
ENSPCAP00000005781pdb,1xqu,A,#1471521.71e-1633.929
ENSPCAP00000005781pdb,1xqu,B,#1471521.81e-1633.929
ENSOGAP00000022060pdb,1xqu,A,#1461505e-1633.333
ENSOGAP00000022060pdb,1xqu,B,#1461505.53e-1633.333
MGP_SPRETEiJ_P0023720pdb,4ndi,B,#1351342.43e-1539
MGP_SPRETEiJ_P0023720pdb,4ndi,A,#1351342.43e-1539
MGP_SPRETEiJ_P0023720pdb,4ndg,A,#1351342.49e-1539
MGP_SPRETEiJ_P0023720pdb,4ndg,B,#1351342.71e-1539
MGP_SPRETEiJ_P0023720pdb,4ndf,A,#1351342.73e-1539

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0380.0740.8880.020.6020.379

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.302259887005650.1299435028248590.03389830508474580.02824858757062150.02542372881355930.0056497175141242900.474576271186441

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)