Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSANAP00000022063pdb,2p8u,B,#153504065.419
ENSMOCP00000012559pdb,2wya,C,#151508089.738
ENSMGAP00000019315pdb,2wya,C,#114433064.929
ENSMOCP00000012559pdb,2p8u,A,#153507065.934
ENSCCAP00000030574pdb,2p8u,B,#153465059.341
ENSCAPP00000009268pdb,2p8u,A,#116464094.286
ENSSARP00000004884pdb,2wya,A,#114470067.834
ENSSTOP00000001708pdb,2wya,C,#151507092.358
ENSORLP00000016160pdb,2p8u,B,#116471078.728
ENSMLUP00000002732pdb,2wya,A,#151514080.603
ENSGMOP00000014202pdb,2wya,A,#114466067.991

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0530.3580.5890.030.5790.391

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.5560.080.0440.05066666666666670.0120.0013333333333333300.256

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)