Protein HSDL2

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSCPOP00000002798	pdb,3kvo,B,#1	1	276	0	89.13
ENSMPUP00000007669	pdb,3kvo,B,#1	1	276	0	88.406
ENSPANP00000018979	pdb,3kvo,B,#1	1	276	0	96.014
ENSPEMP00000003710	pdb,3kvo,B,#1	2	275	0	89.091
ENSFDAP00000007769	pdb,3kvo,B,#1	1	276	0	88.768
ENSRNOP00000056213	pdb,3kvo,B,#1	1	276	0	89.13
ENSTSYP00000026604	pdb,3kvo,B,#1	1	276	0	92.029
ENSCLAP00000016090	pdb,3kvo,B,#1	1	276	0	90.58
ENSBTAP00000041845	pdb,3kvo,B,#1	1	276	0	90.58
ENSMMUP00000015299	pdb,3kvo,B,#1	1	276	0	96.014
ENSMOCP00000010783	pdb,3kvo,B,#1	1	276	0	88.406

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.044	0.171	0.785	0.039	0.233	0.728

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.30046403712297	0.151972157772622	0.031322505800464	0.00580046403712297	0.00580046403712297	0.00580046403712297	0.00116009280742459	0.497679814385151

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.175940561 0.006062074 1.948320413 0.000307809 0.005345789 5.795023570 0.509841766 0.273793739 0.555468480 5.378729368 0.000080944 0.038534129 0.159829699 0.483976431 0.689210694 0.350685032 0.345463488 0.326532971 1.119640317 6.687186552 5.481621496 0.000118043 0.022246677 0.004060498 0.140304955 0.447132648 7.101590671 0.716343351 0.021025461 0.043809464 0.044391614 0.025342052 0.220961508 0.809213970 0.633730145 8.107261897 0.000000045 0.005886021 0.002241179 0.175055305 0.198631582 0.538064150 0.400217338 0.449226329 7.479694551 0.000000002 0.006262250 0.059219078 0.002751703 0.038688772 0.378557927 0.252858382 0.262232144 0.668356821 6.034516352 0.000000002 0.013284702 0.026001057 0.068102963 0.029181058 0.092924421 0.463300203 0.079075844 0.703393266 0.621518769 5.747514715 0.000000002 0.055872768 0.033897660 0.086748666 0.328920302 0.012501221 0.111374952 0.271186866 0.110331135 0.346898584 1.133183725 7.450886053 0.000000002 0.000005344 0.000000015 0.000004318 0.096907911 0.078176835 0.014931746 0.010848389 0.078541756 0.247241405 0.392253562 0.201210461 5.301701859 0.000000002 0.057686680 0.238426323 0.000172486 0.002980775 0.096250872 0.656969471 0.000028795 0.196109684 0.164974350 0.063669206 0.542368252 0.596123660 12.274863774 0.000000002 0.000000001 0.000002001 0.043897589 0.544006596 0.000000001 0.275013755 0.000000001 0.000000001 0.000000001 0.000064996 0.508754403 0.000000002 0.788028784 7.264448965 0.000000002 0.041520183 0.000000002 0.000000013 0.171050938 0.000000005 0.651470319 0.000000005 0.000000009 0.000000095 0.008189790 0.410342549 2.253308641 0.001332501 5.949448345 0.824991316 0.000000002 0.174361106 0.000000002 0.000000002 0.000000001 0.000000024 0.000000001 0.283269617 0.009192725 0.000176953 1.900640516 0.000211877 0.001263270 2.559443589 4.248547847 15.248892845 97.348981639 0.000000002 0.127966554 0.000000002 0.000000005 0.000393390 0.097969059 1.653427459 0.000000106 0.000001410 1.112453756 0.434398753 1.273413587 0.000000176 2.350668303 0.958412369 0.000000022 0.000000032 11.304552348 0.000000002 0.000000001 0.000000002 0.195398422 0.000001383 0.329626614 0.682306907 0.217818554 0.455425200 0.000066364 0.000013277 0.701753145 0.474365307 0.429485046 0.003927527 0.000000022 0.000000032 0.000000070 0.000000044 0.040983500 0.144351000 0.058825300 0.057228200 0.073018600 0.068776000 0.073065800 0.067774300 0.072025000 0.081092000 0.088631700 0.070667300 0.052430900 0.028849200 0.008303190 0.004606400 0.003110880 0.001424320 0.002253380 0.002582930