Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSAMXP00000002258pdb,1sx4,H,#127550052.481
ENSCINP00000016022pdb,1mnf,M,#124550053.321
ENSGMOP00000007231pdb,1sx3,C,#127551051.048
ENSJJAP00000010983pdb,4pj1,L,#124498079.962
ENSHGLP00000011049pdb,1ss8,A,#127550050.573
ENSLOCP00000004708pdb,4hel,J,#127551051.81
ENSGACP00000011870pdb,1mnf,C,#134558051.429
ENSFCAP00000017198pdb,4pj1,M,#127467059.733
ENSXETP00000016354pdb,1pf9,L,#127550050.763
FBpp0078742pdb,3wvl,G,#127550052.099
ENSXMAP00000005920pdb,4pko,J,#127550051.908

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.080.4250.4950.0890.6880.223

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.5814732142857140.04352678571428570.01004464285714290.003348214285714290.003348214285714290.003348214285714290.002232142857142860.352678571428571

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)