Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSETEP00000012409pdb,1qu3,A,#158852038.854
ENSGACP00000017592pdb,1ffy,A,#1571003036.307
ENSMAUP00000012601pdb,1ffy,A,#160997036.205
ENSNGAP00000003988pdb,1ffy,A,#1601009037.602
ENSLAFP00000009284pdb,1qu3,A,#145839041.469
ENSCPOP00000011651pdb,1ffy,A,#1601006037.332
ENSCLAP00000004981pdb,1ffy,A,#120920038.486
ENSJJAP00000015564pdb,1qu3,A,#160854041.594
ENSCLAP00000004981pdb,1qu3,A,#120765042.287
ENSNGAP00000003988pdb,1qu3,A,#160854040.847
ENSTRUP00000010620pdb,1qu3,A,#111797039.299

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0580.1210.8210.090.5540.356

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.6624605678233440.1182965299684540.01735015772870660.0007886435331230280.001577287066246060.00078864353312302800.198738170347003

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)