Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSDNOP00000016629pdb,1lvg,A,#151866.68e-9478.142
ENSDNOP00000016629pdb,1gky,A,#151821.38e-4748.333
ENSDNOP00000016629pdb,1ex6,B,#151821.38e-4748.333
ENSDNOP00000016629pdb,1ex7,A,#151821.38e-4748.333
ENSDNOP00000016629pdb,1ex6,A,#151821.38e-4748.333
ENSDNOP00000016629pdb,4f4j,A,#121821.26e-4647.541
ENSDNOP00000016629pdb,1z6g,A,#161841.25e-3236.264
ENSDNOP00000016629pdb,2qor,A,#161845.73e-3236.813
ENSDNOP00000016629pdb,2anb,A,#181817.51e-2738.764
ENSDNOP00000016629pdb,2anc,B,#181817.58e-2738.764
ENSDNOP00000016629pdb,2anc,D,#181817.58e-2738.764

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0830.1350.7820.0910.5470.361

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.3374827109266940.139695712309820.019363762102351300.001383125864453670.002766251728907330.001383125864453670.49792531120332

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)