Protein IDH3A

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
FBpp0307649	pdb,3blx,I,#1	50	377	3.13e-107	48.494
F43G9.1.2	pdb,3blx,I,#1	27	357	1.19e-100	45.373
ENSXETP00000021498	pdb,3blx,I,#1	35	364	5.62e-100	46.707
ENSPMAP00000002114	pdb,3blx,I,#1	20	352	4.48e-99	46.588
ENSLACP00000005638	pdb,3blx,I,#1	33	365	5.98e-98	45.697
ENSLOCP00000018259	pdb,3blx,I,#1	35	367	9.27e-98	45.994
ENSDARP00000094415	pdb,3blx,I,#1	32	364	1.85e-97	45.994
ENSSTOP00000027794	pdb,3blx,I,#1	33	365	2.8e-97	45.697
ENSMGAP00000003636	pdb,3blx,I,#1	34	363	5.8e-97	45.509
ENSGMOP00000014339	pdb,3blx,I,#1	3	335	1.11e-96	45.697
ENSTRUP00000031895	pdb,3blx,I,#1	38	370	1.62e-96	45.994

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.084	0.14	0.776	0.086	0.595	0.32

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.303370786516854	0.149812734082397	0.00624219725343321	0.00124843945068664	0.00499375780274657	0.00124843945068664	0.00249687890137328	0.530586766541823

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

1.805307789 0.172272875 1.675606783 0.000000055 0.003900504 5.512885385 0.260499893 0.129654771 0.062397623 5.218952303 0.000000055 0.000017798 0.012349082 0.046713581 0.009822260 0.000000055 0.239614042 0.000962293 0.158607092 6.131490893 6.595264053 0.000000055 0.014326651 0.000004827 0.170707552 0.125091455 6.412394399 0.002702523 0.000000055 0.007205406 0.003711148 0.081052023 0.023272493 0.523213140 0.012152631 7.638647385 0.000000055 0.000054853 0.000000042 0.000000001 0.000052593 0.476890049 0.613391382 0.011500494 5.675053412 0.000000055 0.000000001 0.000037114 0.000015409 0.039062326 0.264970322 0.008884375 0.341201869 0.886226128 7.204709307 0.000000055 0.025157099 0.000000884 0.085147852 0.044850891 0.064410743 0.105344891 0.791170008 0.379673261 0.223474998 5.937257408 0.000000055 0.000000001 0.000000001 0.000000093 0.329187681 0.445375767 0.000004461 0.000048911 0.564740585 0.049659594 1.395889814 11.848173487 0.000000055 0.000386387 0.000000001 0.120671069 0.000000111 0.000172986 0.000000001 0.051559967 1.451218302 0.000042007 0.718530174 0.000000768 28.713676774 0.000000055 0.000007643 0.000000001 0.000000001 0.000000001 0.657806955 0.000000001 0.000000004 0.000010258 1.179790773 0.000067635 0.000002571 22.699685240 92.957612446 0.000000055 0.000000001 0.000000042 0.000119436 0.745720864 0.000000011 0.000000001 0.000000001 0.000000001 0.000000001 3.662427894 0.000000003 0.000787862 23.776845246 0.000003534 0.000000055 0.000000001 2.239399467 2.325314549 0.000000175 1.534673899 0.000000001 0.000000002 0.000000001 0.000000013 0.005380041 6.208663758 0.727446298 29.823395425 0.000000348 230.619372974 0.000000055 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 1.140107905 0.000000003 0.742917896 0.000000015 0.000000047 0.000074626 0.000000067 0.000000055 0.078446055 0.000937424 0.000000186 0.469485606 0.000000001 0.000000009 0.000000001 0.000000001 0.000000001 0.000000001 0.000000003 2.608084107 0.000000171 0.000000130 41.276317437 19.547475346 316.026979284 0.000000055 0.000000001 0.000000001 0.000000001 0.000000202 0.000000001 0.000000001 0.000000001 0.000000001 0.000000004 0.000182668 0.000000877 0.646126674 0.022081558 111.081784282 1.013936240 0.000077090 174.814263859 177.268343133 0.001819590 0.144368000 0.101976000 0.087847900 0.102509000 0.089156400 0.102902000 0.083331900 0.073532700 0.073250700 0.066984800 0.035825100 0.020269400 0.006515120 0.002129260 0.000718630 0.001484560 0.001183130 0.003442160 0.000753542