Protein IDH3B

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
YNL037C	pdb,3blx,I,#1	28	360	0	100
ENSOGAP00000018906	pdb,3blx,I,#1	40	369	1.51e-116	51.36
ENSCSAVP00000002554	pdb,3blx,I,#1	43	376	7.84e-116	48.657
ENSAMXP00000018495	pdb,3blx,I,#1	49	379	3.31e-115	50.602
ENSLACP00000009067	pdb,3blx,I,#1	47	376	5.95e-115	49.849
ENSLACP00000008322	pdb,3blx,I,#1	59	389	5.2e-114	48.358
ENSTNIP00000018143	pdb,3blx,I,#1	9	336	8.46e-114	49.848
ENSPSIP00000009082	pdb,3blx,I,#1	2	333	1.06e-113	48.649
ENSONIP00000025670	pdb,3blx,I,#1	49	380	1.52e-113	48.348
ENSSTOP00000016937	pdb,3blx,I,#1	54	380	1.59e-113	49.39
ENSGMOP00000009651	pdb,3blx,I,#1	39	370	2.52e-113	48.048

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.079	0.154	0.767	0.045	0.498	0.457

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.214678899082569	0.104587155963303	0.0284403669724771	0.0211009174311927	0.0110091743119266	0.00825688073394495	0.0073394495412844	0.604587155963303

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

2.077968279 0.000164160 1.641435054 0.000629308 0.000127383 5.451151225 0.052579758 0.157652361 0.176157672 4.802033006 0.000000025 0.005915061 0.072248849 0.013756892 0.055251118 0.000943391 0.066374060 0.052631332 0.449467442 5.152721821 6.036755801 0.000000024 0.032867315 0.022915546 0.051959395 0.285921776 6.952808669 0.140122689 0.000000024 0.005791459 0.005921910 0.028181123 0.345832184 1.175190879 0.319264602 8.324460184 0.000000024 0.004136403 0.091246823 0.010926684 0.089091653 0.184940947 0.319125517 0.277250079 8.076369682 0.000000136 0.016256107 0.009110683 0.016653880 0.015518700 0.543602583 0.039034237 0.327480443 0.452326051 7.953324107 0.159462263 0.034614883 0.050001381 0.000013694 0.093487499 0.308413940 0.057507346 0.221075619 0.671434787 0.021522450 9.689957704 0.089044117 0.000000298 0.009846565 0.000023855 0.099531799 0.012774564 0.095636796 0.686079449 0.006814398 0.602593479 1.061173753 15.234339754 0.000000024 0.000000001 0.000000010 0.000000021 0.000040408 0.000003189 0.000005431 0.008667673 0.018143199 0.233397796 0.450228894 0.008931837 43.052097095 0.000000024 0.000000001 0.000000001 0.000000007 0.000302859 0.236101896 0.000411070 0.120282768 0.807452065 0.033220600 1.504664947 0.001974659 0.055020609 99.330749685 0.000000346 0.000000002 0.058506815 0.007492944 1.745828504 0.043837897 0.011921118 0.046579733 0.306519780 0.745932892 1.284214445 0.069868767 1.727752038 38.503684577 286.499349290 0.000000024 0.000000001 0.087585559 0.688760405 0.076507258 0.000015357 0.000100554 0.000011887 0.000363251 0.320277342 4.864095024 0.439286387 0.528617786 41.025972363 12.425105188 157.010927376 0.000000024 0.000000001 0.000244625 0.000003784 0.005320520 0.000000036 0.000000210 0.000000537 0.001485837 0.000151836 0.001606117 3.080538408 1.144425300 5.536251940 0.011794780 5.141395094 229.182338985 0.000000024 0.000000001 0.044973292 0.000004474 0.010880567 0.739565254 0.518329695 0.982308426 0.104752168 0.000003546 0.000000200 0.000000030 0.000049551 19.373721734 7.483669077 9.228072720 19.157456166 88.140458344 0.000000024 0.000000001 0.000244929 0.002379198 0.336394577 0.001989835 0.005422117 0.001572228 0.001012650 2.617537524 1.308571051 0.093693071 0.393290147 32.041548262 43.878483614 306.775618090 49.336361707 218.727009681 20.611797361 0.004126550 0.161081000 0.108580000 0.086807400 0.108714000 0.095701900 0.108567000 0.076748400 0.064358000 0.065464200 0.049957700 0.035021800 0.016425100 0.008512510 0.002374330 0.001240920 0.001036860 0.001299460 0.001664440 0.002319290