Protein IVD

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSHGLP00000017627	pdb,2vig,E,#1	34	412	0	93.668
ENSONIP00000023113	pdb,1egc,B,#1	40	425	0	80.829
ENSFDAP00000017672	pdb,2jif,A,#1	52	432	0	85.039
ENSOPRP00000007110	pdb,1egc,B,#1	130	446	0	92.429
ENSTTRP00000010029	pdb,1ivh,B,#1	38	424	0	80.879
ENSSARP00000000152	pdb,1sir,A,#1	47	436	0	83.846
ENSEEUP00000009678	pdb,2a1t,B,#1	25	444	0	79.048
ENSHGLP00000010805	pdb,1egd,B,#1	35	421	0	89.147
ENSLOCP00000004158	pdb,2a1t,C,#1	37	424	0	85.309
ENSCPOP00000010012	pdb,1egc,B,#1	26	363	0	71.059
ENSCAFP00000030246	pdb,1ege,A,#1	35	420	0	93.005

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.102	0.328	0.57	0.019	0.032	0.949

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.106027987082885	0.1254036598493	0.0457481162540366	0.0392895586652314	0.031216361679225	0.0134553283100108	0.00538213132400431	0.633476856835307

Loading ...

Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.234085003 0.094499984 1.489622436 0.040902168 0.148186045 4.199866624 0.285741307 0.465868470 0.526872926 4.462766854 0.009985822 0.056273583 0.351241790 0.525165062 0.755439808 0.234339945 0.448782422 0.702557821 0.962568320 4.594740622 6.232619819 0.009936922 0.033085539 0.146092613 0.449188518 0.569909796 6.511961851 0.893584018 0.004806967 0.024221017 0.118285417 0.427509993 0.700140127 1.337222386 0.814137243 7.863285851 0.000206633 0.026291201 0.067100458 0.112479642 0.378024647 0.871511239 0.569104571 0.991533303 8.291051192 0.000013332 0.005173761 0.102110333 0.033264276 0.369382013 0.555119619 0.485110433 0.485824447 0.798174230 8.760684962 0.004548719 0.028894432 0.052925116 0.056120352 0.193875041 0.438965092 0.324824902 0.398098095 0.728394572 0.444706096 8.177226307 0.001065461 0.018726296 0.063960110 0.067717109 0.246780701 0.174589439 0.285235293 0.067950623 0.513692511 0.414559165 0.778569092 11.415429779 0.000000002 0.030085067 0.025207008 0.112277346 0.235606774 0.099906904 0.303760042 0.226306284 0.098976097 0.239622626 0.541602816 0.364497417 12.650321295 0.022388072 0.017203870 0.002033713 0.000029290 0.157135609 0.168059314 0.338241204 0.116496788 0.073352249 0.145946867 0.368615432 0.157254814 0.693312945 6.102385396 0.000000002 0.000001251 0.134566228 0.001353072 0.345882175 0.023936695 0.371102341 0.159397233 0.056138762 0.207650011 0.586566270 0.060579380 0.028044122 0.501816160 2.474911661 0.000000002 0.018636507 0.012204004 0.000000774 0.165021601 0.086827899 0.505424549 0.074569912 0.114408251 0.485780670 0.455253362 0.165445045 0.524683001 0.465811712 0.670885328 1.812482134 0.000000002 0.010950449 0.000001943 0.000000176 0.199649243 0.000964273 0.271105502 0.143278156 0.024259865 0.156091483 0.125164908 0.103185768 0.664867187 1.044046970 1.077419043 0.000059668 0.287482604 0.000000002 0.009474462 0.051882302 0.235320671 0.287538354 0.071612774 0.157379644 0.197180909 0.049790867 0.035291258 0.454737047 0.516322217 0.403240438 1.027289193 1.551701438 0.306240884 0.529422977 7.489627710 0.000000003 0.000003873 0.083512469 0.190411572 0.316310529 0.164157312 0.364683197 0.264267429 0.474133653 0.282451774 0.250136888 0.392693753 1.017954709 1.892742517 0.715182729 1.032829782 0.598883433 0.746512500 19.532933485 0.060798000 0.165164000 0.078125100 0.071776100 0.091060200 0.074654000 0.088578800 0.063673000 0.065484700 0.060470500 0.054424200 0.042580000 0.029101000 0.018164700 0.010329500 0.005457240 0.004354420 0.007011470 0.004446690 0.004346210