Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSTNIP00000006530pdb,4g26,A,#11144635.4e-1823.785
ENSTNIP00000006530pdb,4g24,A,#11144635.4e-1823.785
ENSHGLP00100012098pdb,4g26,A,#11555801.48e-1721.369
ENSHGLP00100012098pdb,4g24,A,#11555801.48e-1721.369
ENSTRUP00000011606pdb,4g26,A,#11254631.89e-1624.603
ENSTRUP00000011606pdb,4g24,A,#11254631.89e-1624.603
ENSOANP00000022167pdb,4g24,A,#11153622.83e-1626.562
ENSOANP00000022167pdb,4g26,A,#11153622.83e-1626.562
ENSFDAP00000005317pdb,4g24,A,#11485796.11e-1621.721
ENSFDAP00000005317pdb,4g26,A,#11485796.11e-1621.721
ENSMOCP00000011025pdb,4g26,A,#11495788.86e-1622.314

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0280.0570.9150.1090.5280.363

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.4089219330855020.2738537794299880.03593556381660470.008674101610904590.001239157372986370.004956629491945480.001239157372986370.265179677819083

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)