Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSONIP00000000609pdb,3dme,B,#162848.91e-3836.491
ENSONIP00000000609pdb,3dme,A,#162848.91e-3836.491
ENSTRUP00000024704pdb,3dme,B,#142822.25e-3735.106
ENSTRUP00000024704pdb,3dme,A,#142822.25e-3735.106
ENSORLP00000011434pdb,3dme,A,#1304311.12e-3630.617
ENSORLP00000011434pdb,3dme,B,#1304311.12e-3630.617
FBpp0080728pdb,3dme,B,#1423161.44e-3635.971
FBpp0080728pdb,3dme,A,#1423161.44e-3635.971
ENSMOCP00000013353pdb,3dme,B,#1473282.19e-3632.281
ENSMOCP00000013353pdb,3dme,A,#1473282.19e-3632.281
ENSCGRP00001025870pdb,3dme,B,#1473282.23e-3632.281

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0450.0820.8730.0860.6640.251

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.5144092219020170.125360230547550.017291066282420800000.342939481268012

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)