Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
Y45F10D.11apdb,2qmi,C,#1373863.65e-1926.111
Y45F10D.11apdb,2qmi,D,#1373863.65e-1926.111
Y45F10D.11apdb,2qmi,E,#1373863.65e-1926.111
Y45F10D.11apdb,2qmi,A,#1373864.25e-1926.111
Y45F10D.11apdb,2qmi,F,#1373864.25e-1926.111
Y45F10D.11apdb,2qmi,G,#1373864.25e-1926.111
Y45F10D.11apdb,2qmi,B,#1373864.25e-1926.111
Y45F10D.11apdb,2qmi,H,#1373864.25e-1926.111
Y45F10D.11apdb,4gdn,A,#1403951e-1822.905
Y45F10D.11apdb,3o3v,A,#1403991.14e-1823.757
Y45F10D.11apdb,3o3v,C,#1403991.14e-1823.757

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0230.0590.9180.0850.4620.453

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.4774096385542170.2424698795180720.06927710843373490.03463855421686750.01807228915662650.007530120481927710.007530120481927710.143072289156627

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)