Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSODEP00000013241pdb,2bte,D,#180900037.156
ENSACAP00000014448pdb,2bte,D,#159902036.313
ENSACAP00000014448pdb,2bte,A,#159902036.313
YLR382Cpdb,2bte,A,#125842038.85
ENSGALP00000043805pdb,2bte,D,#178909036.907
ENSSHAP00000000930pdb,2bte,D,#161901036.384
ENSODEP00000013241pdb,2bte,A,#180900037.156
ENSCAPP00000014700pdb,2bte,A,#158900037.388
ENSCAPP00000014700pdb,2bte,D,#158900037.388
ENSLOCP00000002392pdb,2bte,D,#158901037.832
ENSGALP00000043805pdb,2bte,A,#178909036.907

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0170.0260.9570.0650.5550.38

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.426273458445040.3753351206434320.003574620196604110.0008936550491510280000.193923145665773

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)