Protein LETM1

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
YOL027C	pdb,3skq,A,#1	182	408	9.52e-166	100
YPR125W	pdb,3skq,A,#1	203	352	1.43e-34	39.474
ENSSSCP00000009248	pdb,3skq,A,#1	232	401	1.48e-33	39.773
ENSJJAP00000024712	pdb,3skq,A,#1	251	417	4.39e-33	39.884
ENSLOCP00000008499	pdb,3skq,A,#1	250	421	6.23e-33	40.341
ENSAMEP00000014978	pdb,3skq,A,#1	251	417	6.43e-33	40.462
ENSMPUP00000010955	pdb,3skq,A,#1	229	395	6.91e-33	40.462
ENSCAFP00000022062	pdb,3skq,A,#1	251	420	7.1e-33	39.773
ENSECAP00000016246	pdb,3skq,A,#1	225	391	1.26e-32	39.306
ENSSARP00000002783	pdb,3skq,A,#1	205	370	1.4e-32	41.618
ENSTSYP00000006091	pdb,3skq,A,#1	204	370	1.97e-32	38.728

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.02	0.037	0.943	0.042	0.418	0.54

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.198142414860681	0.297213622291022	0.053405572755418	0.0178018575851393	0.0131578947368421	0.00696594427244582	0.00464396284829721	0.408668730650155

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.228973861 0.229048938 3.019066965 0.051039465 0.000029486 6.555399009 0.028920369 0.000204774 0.030469082 6.707185288 0.001166404 0.034321675 0.087680978 0.138713189 0.203693618 0.016816101 0.075354056 0.036600117 0.636803274 6.812627615 7.732492326 0.000674203 0.005160029 0.008825349 0.107932413 0.083912138 7.387706840 0.244526938 0.000049792 0.000125036 0.011220859 0.054635996 0.180046454 0.734331642 0.121831249 7.911902536 0.000082399 0.005559622 0.011326719 0.043018990 0.025508138 0.070270629 0.065755149 0.188067268 6.613194403 0.000008806 0.000059510 0.000018313 0.028793921 0.003635269 0.175044225 0.017998127 0.003411302 0.036682110 4.562232749 0.000012190 0.000066937 0.005274690 0.018483158 0.027606879 0.079453938 0.114991703 0.068613355 0.178605000 0.028502759 4.149038792 0.000007228 0.004089605 0.000197941 0.000173013 0.012995071 0.015189485 0.001588950 0.039389078 0.192607024 0.125956345 0.013941984 4.910782525 0.000041428 0.002174954 0.024877278 0.109388745 0.075456359 0.102807279 0.000477871 0.196559954 0.127751796 0.050390218 0.000356892 0.000125369 12.039781357 0.000096724 0.000000031 0.056836901 0.097274867 0.000007736 0.000005724 0.000000698 0.043870894 0.345837379 0.002322154 0.058036732 0.277577177 0.025089886 27.202771063 0.017227218 0.000143271 0.182124770 0.064977250 0.196924550 0.000547268 0.039051381 0.015872032 0.011345490 0.044541124 0.004408900 0.382126551 0.905588783 0.277011014 249.026504734 3.340152829 1.859196923 0.553910621 0.016072264 0.276153050 0.002648097 0.254335288 0.000580493 0.000992072 0.081026133 0.786168040 0.010310523 0.003560517 0.013622505 0.177365259 334.366732082 0.006729551 0.000000095 0.000000005 0.000000008 0.000152040 0.000052053 0.755916239 0.000147270 0.000067326 0.003241748 0.611358565 0.001403271 0.000037481 0.000008388 0.000000064 0.000094519 319.459165739 0.036663624 0.394669671 0.000248187 0.000382599 1.121894509 0.147417327 0.398284026 0.007497518 0.046560014 0.002947158 0.002662281 0.677818624 2.260998653 6.774340253 0.016441164 0.126732241 184.465270417 329.654979482 0.126829944 0.000002050 0.292763850 0.021854936 0.186621352 0.416490941 0.025106137 0.007118221 0.405172791 0.020348949 0.169752832 0.007759088 1.163405614 1.405940841 0.006735220 15.098559545 102.742073981 135.973960430 85.083461002 0.004262290 0.087874500 0.060400900 0.063296000 0.081887200 0.075354100 0.082134100 0.068882800 0.077660200 0.088540200 0.116520000 0.110169000 0.058268500 0.016051600 0.003585020 0.001258630 0.000596264 0.000529041 0.000549598 0.002179880