Protein LETMD1

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSSARP00000003675	pdb,3skq,A,#1	230	332	1.71e-08	30.097
ENSPSIP00000016274	pdb,3skq,A,#1	174	312	1.74e-08	30.935
ENSXETP00000021221	pdb,3skq,A,#1	246	322	5.83e-08	36.364
ENSTTRP00000013113	pdb,3skq,A,#1	229	331	1.39e-07	29.808
ENSBTAP00000038354	pdb,3skq,A,#1	230	332	3.64e-07	28.846
ENSLACP00000013265	pdb,3skq,A,#1	186	292	8.73e-07	28.037
ENSFCAP00000006724	pdb,3skq,A,#1	232	334	9.37e-07	27.885

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.064	0.083	0.853	0.131	0.609	0.26

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.577319587628866	0.14639175257732	0.0144329896907217	0.00206185567010309	0.00206185567010309	0	0.00412371134020619	0.25360824742268

Loading ...

Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.517912962 10.075809014 2.341886043 14.562568859 0.000004585 5.009506821 72.026890261 0.019285915 0.066035436 6.595125835 61.052678777 0.093094095 0.045354413 0.177043294 0.175853931 52.588459863 0.229795150 0.077630569 0.187484650 7.794843816 6.337668650 28.159541623 0.003052280 0.130620136 0.064326980 0.059629851 9.052575572 0.049152740 25.949614389 0.014160219 0.023975725 0.048287097 0.328368797 0.473269486 0.023259059 7.088758423 9.643598350 0.000000001 0.000749657 0.132927052 0.014072250 0.080735165 0.343575510 0.000071875 7.903085873 9.657177996 0.000037616 0.067928330 0.011046059 0.090083582 0.248157490 0.071045448 0.000005612 0.000303279 5.101112248 8.135296831 0.014227588 0.000002483 0.000184040 0.029892509 0.096613986 0.302802089 0.122396157 0.004069750 0.000215774 6.685317210 33.588485485 0.000000489 0.040395719 0.000075614 0.081738205 0.199990804 0.092249199 0.032099807 0.056942245 0.001986584 0.003750035 8.876992137 1.377988163 0.000000001 0.000000001 0.000000001 0.030917535 0.000000829 0.000660770 0.238461538 0.149013044 0.240451162 0.003926915 0.000016211 19.163924489 16.354473597 0.079300071 0.863844184 0.000000301 0.000001828 5.184250975 0.000005058 0.555400627 1.637269348 0.071307557 5.739670221 0.008448764 0.000155440 100.537194446 1.097180942 0.000000001 0.000000001 0.000000001 0.000040093 0.044945152 0.004650099 0.008726373 0.000115450 2.011114649 0.000001814 0.000000598 0.000195120 28.931550605 8.650843475 6306.432396423 0.601464485 5.033054639 0.029800937 3.762146790 1.066527411 0.174798877 0.072029889 5.891165030 0.059035774 0.032668790 0.008249518 15.020667359 0.000064831 0.021934387 0.000205469 0.032904379 0.000000001 0.000000001 0.000000001 0.000035920 2.908695595 0.005356043 0.000007095 0.000000001 0.000000016 4.847525365 0.000000028 0.000000003 0.000000007 0.000000090 0.000000101 0.000106654 0.000210738 0.000000001 0.000000001 0.000000001 0.052562724 0.000000001 0.000000001 0.003714351 0.000012021 0.000000001 0.000000001 0.000000002 0.000000003 0.000000007 42.109898388 0.000000101 0.001053983 351.391673019 62.863191473 0.000015759 0.392099572 0.000000267 0.000337399 0.001959130 0.625102280 0.010733685 2.422915762 0.494531405 0.000000002 0.000000002 0.450759150 7.057243546 0.004652458 0.000776580 0.880450948 103.686082185 179.342654947 0.000003122 0.134928000 0.100349000 0.082652100 0.094026900 0.076119000 0.091660200 0.074945000 0.079876900 0.076637600 0.077567000 0.054646100 0.034644000 0.015152800 0.001115030 0.000993277 0.000422931 0.000368657 0.002276430 0.001615260