Protein LONP1

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSOANP00000019739	pdb,3wu6,F,#1	31	212	4.99e-56	47.802
ENSOANP00000019739	pdb,3wu4,B,#1	31	212	5.26e-56	47.802
ENSOANP00000019739	pdb,3wu3,B,#1	31	212	5.32e-56	47.802
ENSOANP00000019739	pdb,3wu4,C,#1	31	212	5.32e-56	47.802
ENSOANP00000019739	pdb,3wu3,D,#1	31	212	5.32e-56	47.802
ENSOANP00000019739	pdb,3wu3,C,#1	31	212	5.32e-56	47.802
ENSOANP00000019739	pdb,3wu5,D,#1	31	212	5.32e-56	47.802
ENSOANP00000019739	pdb,3wu5,C,#1	31	212	5.32e-56	47.802
ENSOANP00000019739	pdb,1rr9,E,#1	31	212	5.6e-56	47.802
ENSOANP00000019739	pdb,3wu5,E,#1	31	212	5.6e-56	47.802
ENSOANP00000019739	pdb,3wu6,B,#1	31	212	5.99e-56	47.802

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.028	0.045	0.927	0.049	0.486	0.465

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.239862935465448	0.238720731010851	0.0462592804111936	0.0479725870930897	0.0194174757281553	0.00342661336379212	0.00285551113649343	0.401484865790977

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.184457280 2.788161145 2.141347374 8.470466434 0.002043813 5.827418021 68.176765475 0.101574365 0.052523361 5.812867664 25.969340308 0.004819166 0.058667716 0.101533915 0.074539991 58.286835222 0.121428196 0.105498277 0.461233430 6.471186162 7.184798601 140.866753851 0.002130268 0.016404496 0.152396664 0.082594154 7.621982039 0.169990886 15.984234234 0.002798915 0.032205338 0.012518218 0.145510638 0.665348827 0.128221408 6.727707484 19.975879105 0.028371253 0.007833617 0.001083586 0.003666665 0.148597862 0.272542185 0.067060017 5.860212076 43.714399884 0.003235697 0.004451913 0.000137229 0.044689997 0.333221278 0.062486347 0.297684278 0.095649233 5.840928685 25.589109271 0.001118280 0.029390194 0.000096459 0.140001125 0.182882210 0.020956299 0.075731511 0.240248888 0.023128607 5.961963146 17.450704737 0.026144457 0.002899541 0.000000270 0.309887712 0.000132906 0.036559162 0.009917419 0.075544552 0.058410336 0.058481513 10.341416361 33.718613775 0.004561258 0.000006346 0.050431235 0.077539351 0.000061196 0.002324686 0.111733933 0.163053334 0.056424042 0.002389451 0.012643294 15.439842396 713.844086022 0.819841812 0.019979387 0.000160609 0.019406789 0.000295710 0.000752705 0.581274783 0.251617177 0.178557719 0.043264621 0.002153887 1.674197086 101.214218955 314.592051729 0.795858277 0.150399713 0.318484170 0.046552850 0.000318677 0.000670605 0.320696622 0.025572297 0.276287609 0.449832700 0.019668657 0.061764447 0.032826445 349.510752236 3998.910200523 0.000000020 0.000720815 2.037491675 0.113185634 0.053019175 0.046113758 1.312856162 0.035883135 1.054944548 0.448078440 0.058342585 0.114180635 0.000019646 1.426900216 2560.379939648 0.001973925 0.000000001 0.000000001 0.000000001 0.000000001 0.000000094 0.000000001 0.000020063 0.000002015 0.000000071 0.000000004 0.000000002 0.000000069 0.129370951 122.173157260 58.134579696 199.347968530 0.007077521 0.000000001 0.000000001 0.000007936 0.000000023 0.000000008 0.000000001 0.000001361 0.001904213 0.000827749 0.000047472 0.000000476 3.111548148 4.152953570 42.118835338 92.048893727 1.520543802 1143.202236121 4501.671025865 0.063250133 4.170298621 0.171464360 3.296159885 0.220733011 1.830212495 2.988876910 0.530016994 5.121015194 1.441994694 0.327655676 29.251008720 61.565574160 113.012728853 27.888625535 45.464371956 148.034028350 608.489798869 0.000002753 0.133133000 0.080145100 0.071770600 0.092476400 0.084481700 0.092929100 0.076615400 0.092089500 0.095343400 0.083682000 0.051523600 0.029542400 0.012625400 0.001426680 0.000451019 0.000218241 0.000411069 0.000608707 0.000524052