Protein LRPPRC

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSSHAP00000022126	pdb,4ozs,A,#1	82	245	4.85e-15	27.879
ENSMODP00000000775	pdb,4ozs,A,#1	82	234	1.84e-13	26.797
ENSPEMP00000026695	pdb,4ozs,A,#1	129	293	2.79e-13	27.879
ENSAMXP00000004344	pdb,4ozs,A,#1	153	307	2.95e-13	28.387
ENSOGAP00000011476	pdb,4ozs,A,#1	131	295	3.09e-13	27.273
ENSOCUP00000012939	pdb,4ozs,A,#1	196	360	3.12e-13	27.273
ENSPCOP00000000526	pdb,4ozs,A,#1	133	297	3.48e-13	27.273
ENSLAFP00000019681	pdb,4ozs,A,#1	135	301	3.8e-13	25.15
ENSFDAP00000006602	pdb,4ozs,A,#1	139	303	4.6e-13	25.455
ENSPMAP00000002368	pdb,4ozs,A,#1	61	216	4.73e-13	26.923
ENSCCAP00000028032	pdb,4ozs,A,#1	142	296	5.61e-13	27.097

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.029	0.056	0.916	0.058	0.51	0.432

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.570109636468552	0.228505481823428	0.00807847663012118	0.00115406809001731	0.00346220427005193	0.0051933064050779	0.00230813618003462	0.181188690132718

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.019693292 0.611151095 1.828584058 9.933087405 0.000008204 5.844411209 115.113754423 0.074887063 0.041143476 7.746242322 89.158774373 0.010993682 0.066354282 0.073442321 0.324848259 190.385304525 0.114189604 0.104090095 0.740881792 8.755546486 11.744512081 100.961529775 0.000198998 0.054938133 0.105668598 0.127660360 10.673027538 0.558795725 7.245682451 0.000000153 0.025520302 0.013759636 0.079683687 0.352340948 0.136207878 7.530827740 12.623624181 0.000000005 0.000180558 0.000071429 0.050163030 0.063166895 0.511273982 0.001628728 5.431436256 2.417911616 0.000000001 0.000000001 0.000000002 0.001259649 0.170590618 0.049748142 0.000270509 0.000067938 5.508989071 8.799186931 0.000055052 0.000000316 0.000348199 0.126348089 0.170980090 0.036081791 0.018589913 0.000779035 0.000091708 5.425153655 10.239524204 0.000000001 0.000000005 0.000439855 0.024615219 0.037157873 0.084461278 0.309098989 0.093639180 0.036487134 0.000436192 13.255262493 0.007129534 0.000000001 0.000000148 0.000000001 0.204028204 0.000000002 0.004136002 0.000000001 0.000119728 0.000000498 0.000000307 0.000000002 16.820042700 0.002843635 0.090741879 0.000755215 0.000000057 0.000000497 0.000000002 0.000000092 0.000000014 0.000000673 0.727912552 0.000000001 0.000000002 5.821338136 47.264310289 810.473537604 0.000188741 1.161759451 0.643212827 1.928375433 1.005497617 0.156437308 5.595116097 0.022149741 0.059328322 0.839868585 2.342766623 2.478210041 10.598720600 0.039480767 0.562068810 0.317390109 0.219685348 0.000000054 0.000430361 2.636916741 0.000402731 0.000000004 0.000000001 0.000000001 0.000000153 2.802313942 0.000092697 0.000000361 0.000005590 1020.200094182 0.000030114 0.000000001 0.000000001 0.000000001 0.000000001 0.000000002 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000013 0.000000005 0.000000012 0.000000189 0.000000289 276.695463350 0.000030114 0.000000001 0.000000001 0.000000001 0.000000001 0.000000002 0.000000001 0.000000001 0.111049689 1.625782604 0.000017267 3.172291978 0.963443423 0.000000012 92.962217565 0.000000289 0.113175655 1123.495278868 0.005149078 0.000000001 0.000000001 0.000000001 0.000000001 0.005888999 0.000097940 0.000002492 0.000000001 0.347669303 0.249285111 0.000152221 0.185463581 0.087659083 32.857759913 64.549585858 1559.531389278 1873.914189253 140.275644711 0.000003321 0.185502000 0.093474600 0.084786400 0.092130400 0.064446100 0.079231100 0.068404300 0.091533800 0.088518600 0.078438700 0.041159200 0.022154700 0.008016260 0.000530167 0.000346137 0.000149207 0.000201117 0.000349653 0.000624515