Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSLOCP00000016990pdb,1ojd,I,#121506068.313
ENSGALP00000026110pdb,1ojd,C,#125512071.107
ENSMICP00000001868pdb,2c75,B,#123505073.499
ENSCGRP00001002919pdb,1gos,A,#123509074.538
ENSDORP00000003706pdb,2v60,A,#123510075.82
ENSAPLP00000013107pdb,1ojc,A,#125510070.782
MGP_PahariEiJ_P0088706pdb,1ojd,L,#123509073.922
ENSAPLP00000013107pdb,2xfp,A,#125510070.782
ENSECAP00000020478pdb,1ojd,E,#123509075.359
ENSSHAP00000006698pdb,1gos,B,#11406071.675
ENSTTRP00000008578pdb,2c75,A,#11341072.141

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.1180.2910.5910.3470.1950.458

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.4763670064874880.0111214087117702000.001853568118628360.002780352177942540.0203892493049120.487488415199259

Loading ...

Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)