Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSVPAP00000000607pdb,2c75,B,#123505068.323
ENSEEUP00000005105pdb,4a79,B,#11480061.458
ENSCSAP00000010077pdb,2vrm,A,#13501098.798
ENSECAP00000001087pdb,1o5w,C,#16513075.787
ENSACAP00000017647pdb,2c73,A,#13501069.739
ENSPCAP00000007974pdb,2c64,B,#137501077.516
ENSLOCP00000016990pdb,1ojd,G,#121504068.595
ENSCPOP00000000927pdb,2c76,B,#1100439074.118
ENSANAP00000034624pdb,1ojd,I,#14500094.769
ENSCAFP00000021307pdb,1ojd,A,#123509074.333
ENSSSCP00000013044pdb,2c67,B,#123505074.948

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0740.3680.5590.0940.4330.473

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.388714733542320.009404388714733540.003918495297805640.002351097178683390.002351097178683390.00078369905956112800.592476489028213

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)