Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
YBR208Cpdb,4iss,A,#110623070.521
YBR208Cpdb,4ist,B,#110623070.684
YBR208Cpdb,4iss,B,#112623070.588
YBR208Cpdb,4ist,A,#110623070.684
ENSCSAP00000009382pdb,4p5o,E,#1622588.02e-148100
ENSCSAP00000009382pdb,4p5o,F,#1642583.96e-146100
ENSCGRP00000020332pdb,2vpq,A,#1594981.88e-14551.247
ENSCGRP00000020332pdb,2vpq,B,#1594982.37e-14551.247
ENSCAPP00000011175pdb,2vpq,A,#1144553.77e-14548.758
ENSCAPP00000011175pdb,2vpq,B,#1144555.28e-14548.758
ENSCPOP00000010137pdb,1ulz,A,#1645135.99e-14550

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.1120.1560.7320.0620.4220.516

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.1848991848991850.1162591162591160.01415701415701420.0030030030030030.0030030030030030.0030030030030030.001287001287001290.674388674388674

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)